Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   U0544_RS02800 Genome accession   NZ_CP139944
Coordinates   431465..432466 (-) Length   333 a.a.
NCBI ID   WP_002116811.1    Uniprot ID   -
Organism   Acinetobacter pittii strain CARB128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426465..437466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS02790 (U0544_02795) pilY1 426793..430647 (-) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  U0544_RS02795 (U0544_02800) pilX 430659..431468 (-) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  U0544_RS02800 (U0544_02805) pilW 431465..432466 (-) 1002 WP_002116811.1 PilW family protein Machinery gene
  U0544_RS02805 (U0544_02810) pilV 432466..433026 (-) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  U0544_RS02810 (U0544_02815) fimU 433020..433448 (-) 429 WP_326938884.1 pilus assembly FimT family protein Machinery gene
  U0544_RS02815 (U0544_02820) ispH 433664..434614 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U0544_RS02820 (U0544_02825) gmk 434737..435366 (+) 630 WP_002116973.1 guanylate kinase -
  U0544_RS02825 (U0544_02830) rpoZ 435439..435717 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  U0544_RS02830 (U0544_02835) - 435756..435911 (+) 156 Protein_463 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35802.50 Da        Isoelectric Point: 6.6395

>NTDB_id=911903 U0544_RS02800 WP_002116811.1 431465..432466(-) (pilW) [Acinetobacter pittii strain CARB128]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTASTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQMSVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=911903 U0544_RS02800 WP_002116811.1 431465..432466(-) (pilW) [Acinetobacter pittii strain CARB128]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTGGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGGCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACAACCCCTTGGGGCGGTGTTGTATTAACTGCTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACTTATATTGCTGACACATTACTTAGTCGTGGTGCAGGCGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACAAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGACTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATGTCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85