Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   U0544_RS02785 Genome accession   NZ_CP139944
Coordinates   426300..426782 (-) Length   160 a.a.
NCBI ID   WP_002116770.1    Uniprot ID   A0A009RUX0
Organism   Acinetobacter pittii strain CARB128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421300..431782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS02750 (U0544_02755) - 421386..422417 (+) 1032 WP_002116720.1 lipase secretion chaperone -
  U0544_RS02755 (U0544_02760) lip 422533..423474 (+) 942 WP_002116859.1 lipase family alpha/beta hydrolase -
  U0544_RS02760 (U0544_02765) rplS 423525..423893 (-) 369 WP_326938882.1 50S ribosomal protein L19 -
  U0544_RS02765 (U0544_02770) trmD 424113..424868 (-) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  U0544_RS02770 (U0544_02775) rimM 424911..425459 (-) 549 WP_326938883.1 ribosome maturation factor RimM -
  U0544_RS02775 (U0544_02780) rpsP 425479..425730 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  U0544_RS02780 (U0544_02785) pilE 425878..426303 (-) 426 WP_002117055.1 type IV pilin protein Machinery gene
  U0544_RS02785 (U0544_02790) pilY2 426300..426782 (-) 483 WP_002116770.1 type IV pilin protein Machinery gene
  U0544_RS02790 (U0544_02795) pilY1 426793..430647 (-) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  U0544_RS02795 (U0544_02800) pilX 430659..431468 (-) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17520.76 Da        Isoelectric Point: 8.4721

>NTDB_id=911900 U0544_RS02785 WP_002116770.1 426300..426782(-) (pilY2) [Acinetobacter pittii strain CARB128]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=911900 U0544_RS02785 WP_002116770.1 426300..426782(-) (pilY2) [Acinetobacter pittii strain CARB128]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.678

100

0.45