Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ABVR74_RS10505 Genome accession   NZ_CP159484
Coordinates   2122689..2123501 (+) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis subsp. lactis strain CBA3648     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2117689..2128501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR74_RS10480 (ABVR74_10480) yaaT 2117744..2118526 (-) 783 WP_023188991.1 stage 0 sporulation family protein Regulator
  ABVR74_RS10485 (ABVR74_10485) - 2118578..2119438 (-) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  ABVR74_RS10490 (ABVR74_10490) tmk 2119571..2120206 (-) 636 WP_012897230.1 dTMP kinase -
  ABVR74_RS10495 (ABVR74_10495) yycF 2120384..2121085 (+) 702 WP_003131580.1 response regulator YycF -
  ABVR74_RS10500 (ABVR74_10500) vicK 2121078..2122520 (+) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  ABVR74_RS10505 (ABVR74_10505) vicX 2122689..2123501 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  ABVR74_RS10510 (ABVR74_10510) groL 2123546..2125174 (-) 1629 WP_003131585.1 chaperonin GroEL -
  ABVR74_RS10515 (ABVR74_10515) groES 2125263..2125547 (-) 285 WP_003131589.1 co-chaperone GroES -
  ABVR74_RS10520 (ABVR74_10520) - 2125667..2126056 (-) 390 WP_010905314.1 single-stranded DNA-binding protein -
  ABVR74_RS10525 (ABVR74_10525) - 2126145..2127485 (-) 1341 WP_023188995.1 FAD-dependent oxidoreductase -
  ABVR74_RS10530 (ABVR74_10530) ytpR 2127648..2128274 (-) 627 WP_353891693.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=911685 ABVR74_RS10505 WP_003131583.1 2122689..2123501(+) (vicX) [Lactococcus lactis subsp. lactis strain CBA3648]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=911685 ABVR74_RS10505 WP_003131583.1 2122689..2123501(+) (vicX) [Lactococcus lactis subsp. lactis strain CBA3648]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685