Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   U0355_RS06035 Genome accession   NZ_CP139874
Coordinates   1194850..1197174 (+) Length   774 a.a.
NCBI ID   WP_347862686.1    Uniprot ID   -
Organism   Salimicrobium sp. PL1-032A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1189850..1202174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0355_RS06010 (U0355_06010) - 1190687..1191357 (+) 671 Protein_1163 YitT family protein -
  U0355_RS06015 (U0355_06015) - 1191311..1191730 (+) 420 WP_347862684.1 Rrf2 family transcriptional regulator -
  U0355_RS06020 (U0355_06020) - 1191749..1192879 (+) 1131 WP_347862878.1 cysteine desulfurase family protein -
  U0355_RS06025 (U0355_06025) mnmA 1192892..1194005 (+) 1114 Protein_1166 tRNA 2-thiouridine(34) synthase MnmA -
  U0355_RS06030 (U0355_06030) - 1194175..1194837 (+) 663 WP_347862685.1 tetratricopeptide repeat protein -
  U0355_RS06035 (U0355_06035) recD2 1194850..1197174 (+) 2325 WP_347862686.1 ATP-dependent RecD-like DNA helicase Machinery gene
  U0355_RS06040 (U0355_06040) alaS 1197557..1200193 (+) 2637 WP_347862687.1 alanine--tRNA ligase -
  U0355_RS06045 (U0355_06045) - 1200254..1200526 (+) 273 WP_347862879.1 IreB family regulatory phosphoprotein -
  U0355_RS06050 (U0355_06050) ruvX 1200523..1200963 (+) 441 WP_347862688.1 Holliday junction resolvase RuvX -
  U0355_RS06055 (U0355_06055) - 1200953..1201237 (+) 285 WP_347862689.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 87949.15 Da        Isoelectric Point: 4.8421

>NTDB_id=911682 U0355_RS06035 WP_347862686.1 1194850..1197174(+) (recD2) [Salimicrobium sp. PL1-032A]
MDNGNVTVDQEEKPYVKVELKRMIFHKEEEAFSIASVKVLETTENLKEKELVIKGYFSPLEEGEAYILYGYFETHKKFGE
QYVVEEYRRVMPETKDGLITYLSSDLFEGIGKKTAGRIVDTLGEGAVSRILSDRKALDEVPKLSQTIKDKLYRTLQEHQG
FEQVMVELTKHGLGLKTIQKIYGVFGEKTLEILEEDPYQFVFTVEGFGFHRADELAKKQNLTDDHPTRIRAGCLYSLHQS
LQAGHVYLPLETCLVEMEQLLQNSGNEAVTYEKLAEEVSHLGEERYVFIEEDRIYLPSLYFAENGFTSQVQRIIAEEVET
GFTQAELLKVIGSIEEEETMSYGKEQFEAIETALKEKMMIITGGPGTGKTTVIKGLLHAYSKLMDCSLDPKAYTKDVAFP
FVLAAPTGRAAKRMTESTGLPASTIHRLLGWDGHQTFEKNHTNQLEGKLMIIDEFSMVDMWLSNQLFRAIPSDMQVVVVG
DEDQLPSVGPGQVLADLLASGVIPSIQLNEVYRQKDGSKIINLAHAIRNDTCTQEMLSKEKDFNFIQAPDFQLKDVVTDI
VAKAHEKSIDLRDVQVLAPMYRTETGIHELNKSLQDRLNPKKKNKREIEWKGNVFRKGDKVIQLVNQSEDNVFNGDIGEV
AAIFREEENVEQVEQVVIEFDGKEVTYPKKELGNIMLAYCTSIHKSQGSEFSIVVLPVTYQYNRMLKKNLLYTAVTRAKQ
SLIICGTPRAFLKGIATKDTNQRFTHLEEKLKQETPVTYDEEEEEEALSPYDFM

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=911682 U0355_RS06035 WP_347862686.1 1194850..1197174(+) (recD2) [Salimicrobium sp. PL1-032A]
ATGGATAACGGAAACGTAACGGTGGACCAGGAAGAGAAACCTTATGTAAAAGTGGAATTGAAACGGATGATTTTCCATAA
AGAAGAGGAAGCTTTTTCTATCGCTTCAGTCAAAGTGCTGGAAACGACGGAAAACCTGAAGGAGAAGGAACTTGTCATTA
AAGGTTATTTCTCTCCGCTGGAGGAAGGCGAGGCATACATTCTTTACGGCTATTTCGAGACCCATAAAAAATTCGGAGAG
CAGTATGTCGTTGAAGAATACAGGCGGGTCATGCCGGAGACAAAGGATGGTCTTATCACTTATTTATCGAGTGATCTATT
CGAAGGAATCGGCAAGAAAACGGCAGGACGTATTGTCGATACGCTCGGGGAAGGGGCAGTGTCCCGGATCCTTTCTGACA
GGAAGGCACTGGATGAGGTACCGAAATTATCCCAGACCATCAAAGATAAGTTATACCGGACGCTTCAGGAGCATCAGGGA
TTTGAGCAGGTTATGGTCGAGCTGACGAAACACGGGCTCGGGTTGAAAACGATTCAGAAAATTTACGGGGTTTTCGGGGA
GAAAACCCTTGAAATTCTCGAAGAAGACCCTTATCAGTTTGTGTTTACGGTAGAAGGGTTCGGATTCCACCGTGCAGATG
AACTGGCGAAGAAGCAAAACCTGACCGATGATCATCCGACACGAATCCGGGCAGGCTGTCTCTATTCCCTGCACCAGAGC
TTACAGGCCGGTCATGTCTATCTGCCGCTTGAAACGTGTCTTGTAGAAATGGAACAATTATTGCAGAATTCCGGGAATGA
AGCAGTGACGTATGAAAAGTTGGCGGAAGAAGTGTCCCATCTCGGGGAAGAAAGATACGTGTTTATAGAAGAAGATAGAA
TTTACTTACCTTCTTTATATTTTGCAGAGAATGGATTCACCTCCCAAGTGCAGAGGATCATCGCTGAAGAAGTGGAGACG
GGATTCACTCAGGCGGAGTTGCTGAAAGTCATCGGTTCTATTGAAGAAGAAGAGACGATGAGTTACGGCAAAGAACAGTT
CGAAGCGATTGAAACAGCCCTCAAAGAAAAAATGATGATTATAACCGGTGGTCCGGGTACAGGGAAAACGACTGTAATCA
AAGGATTGTTGCATGCGTATTCCAAATTGATGGATTGTTCACTCGACCCGAAAGCATATACGAAGGACGTCGCTTTTCCT
TTTGTTCTTGCTGCTCCGACCGGTCGTGCTGCCAAACGGATGACTGAATCGACAGGCCTTCCTGCCAGTACCATCCACCG
TCTGCTCGGCTGGGACGGTCATCAGACCTTCGAGAAAAACCACACGAACCAGCTCGAAGGCAAGCTGATGATCATCGATG
AGTTTTCCATGGTGGACATGTGGCTTTCCAATCAGTTGTTCCGTGCGATTCCTTCTGACATGCAAGTGGTCGTCGTGGGA
GATGAGGATCAGCTTCCTTCCGTCGGCCCCGGTCAGGTGTTGGCGGATTTATTGGCATCCGGTGTGATTCCGTCGATTCA
GCTTAACGAAGTGTATCGTCAGAAAGATGGATCGAAAATCATCAACCTTGCCCATGCAATCAGAAATGACACCTGTACCC
AGGAGATGCTTTCGAAAGAAAAAGATTTCAACTTCATCCAGGCTCCGGATTTTCAATTGAAAGATGTCGTGACGGATATA
GTAGCGAAGGCTCACGAAAAATCCATCGATCTTAGGGATGTACAGGTCCTTGCTCCCATGTACCGTACGGAAACAGGCAT
TCATGAACTGAATAAATCGCTCCAAGATAGACTCAACCCGAAAAAGAAGAACAAGCGGGAGATCGAATGGAAAGGGAACG
TCTTCCGTAAAGGGGATAAAGTCATCCAGCTCGTCAATCAGTCGGAAGACAACGTATTCAATGGCGATATTGGGGAAGTG
GCGGCGATTTTTCGGGAAGAGGAAAATGTGGAGCAGGTGGAACAGGTCGTAATAGAATTTGACGGGAAAGAAGTAACCTA
TCCGAAAAAAGAGCTCGGCAACATCATGCTTGCTTACTGCACCTCCATCCATAAATCCCAGGGTAGTGAATTTTCGATTG
TCGTTTTGCCGGTGACATATCAGTACAATCGTATGTTGAAGAAAAATCTCTTATATACAGCCGTGACTCGTGCAAAGCAG
TCGCTCATTATCTGTGGAACACCCCGTGCCTTCCTGAAGGGTATCGCTACGAAAGATACCAACCAGCGATTCACGCATCT
TGAAGAGAAACTGAAGCAGGAGACACCTGTAACGTATGACGAGGAAGAGGAAGAAGAAGCCTTATCGCCATATGATTTTA
TGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(342-547)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-660)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.487