Detailed information    

insolico Bioinformatically predicted

Overview

Name   pknB   Type   Regulator
Locus tag   ABVR75_RS04025 Genome accession   NZ_CP159464
Coordinates   768004..769887 (+) Length   627 a.a.
NCBI ID   WP_099960271.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   modulate the activity of ComDE; modulate the activity of VicKR (predicted from homology)   
Competence regulation

Genomic Context

Location: 763004..774887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS04010 (ABVR75_04010) fmt 764950..765906 (+) 957 WP_025015869.1 methionyl-tRNA formyltransferase -
  ABVR75_RS04015 (ABVR75_04015) rsmB 765896..767239 (+) 1344 WP_056936395.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ABVR75_RS04020 (ABVR75_04020) - 767261..768007 (+) 747 WP_025015868.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  ABVR75_RS04025 (ABVR75_04025) pknB 768004..769887 (+) 1884 WP_099960271.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  ABVR75_RS04030 (ABVR75_04030) rsgA 769987..770886 (+) 900 WP_011374402.1 ribosome small subunit-dependent GTPase A -
  ABVR75_RS04035 (ABVR75_04035) rpe 770910..771572 (+) 663 WP_016264866.1 ribulose-phosphate 3-epimerase -
  ABVR75_RS04040 (ABVR75_04040) - 771559..772209 (+) 651 WP_016264867.1 thiamine diphosphokinase -
  ABVR75_RS04045 (ABVR75_04045) rpmB 772558..772743 (-) 186 WP_004265581.1 50S ribosomal protein L28 -
  ABVR75_RS04050 (ABVR75_04050) - 773046..773408 (+) 363 WP_016264868.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 68214.83 Da        Isoelectric Point: 5.9848

>NTDB_id=911549 ABVR75_RS04025 WP_099960271.1 768004..769887(+) (pknB) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MMETGYAVAGRYKIIRPIGEGGMANVYLAQDLILDRQVAVKVLRLDLRNDPDTVRRFTREALATTELNHPNIVSIYDVGE
ENSMQYIIMEYIKGTDLKKYIVEHFPIPYQRVIDIMTQILSAVQNAHAHNIIHRDLKPQNILVDEDGNVKISDFGIAIAL
SETAMTQTNTLLGSVHYLSPEQARGSMATKRSDIYSLGIVLYELLTGMVPFEGESAVSIAIKHFQDEVPPVRNYDPRIPQ
ALENVVLKATAKDPDERYSGVDAMMADLATSLSASRAHEPKFVPSKADDLSETKVIPALDPEGITQTNNDEEQVKEAEPT
QKKVKKPAKSKRKWWLLGGGVVLLLLLATVIAFAVQGSEVTVPDLTDMTQQNAESALTDKKLKVGTVQKTTSQKYSKGHV
IRTTPKAGLSVKSRSTVNLIVSSGRQKYKIKDYTNQAYSDVRDALKDKGLKVKRKYQSSSEVSPGLIIDQSIAAGKRVVP
SKTTITLTVSSGKPGFALHNLSNYTKQGIQDYAAQNGLTVVFSEEYSSSISEGMVISQSPASGTMVQEGDSVSVILSKGE
QPTEHHSVVTSSSNSVIESSAPESSQSSESSASESESESESESESESASESISSSASQSSQSSVQSK

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=911549 ABVR75_RS04025 WP_099960271.1 768004..769887(+) (pknB) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGATGGAAACAGGGTACGCTGTAGCGGGGCGTTATAAGATTATTCGCCCCATCGGTGAAGGTGGCATGGCTAATGTTTA
TTTGGCGCAGGATTTAATTTTAGATCGGCAAGTGGCGGTTAAAGTCTTACGATTGGATCTCCGAAATGATCCGGATACGG
TTCGGCGCTTTACGCGAGAAGCGTTGGCAACGACGGAATTAAATCATCCGAATATTGTTAGTATTTACGATGTTGGTGAA
GAAAACAGTATGCAATACATCATTATGGAATATATTAAGGGCACCGATCTTAAGAAATATATCGTGGAACACTTTCCAAT
TCCTTATCAACGCGTAATTGATATTATGACGCAGATTTTATCTGCGGTTCAAAACGCACATGCGCATAATATTATTCATC
GGGATTTAAAACCACAAAATATTTTGGTTGATGAAGACGGCAACGTTAAGATTAGTGACTTTGGGATTGCGATTGCGCTT
AGTGAAACGGCGATGACTCAGACCAATACGTTGTTGGGGTCTGTTCATTATCTCTCACCGGAACAGGCAAGAGGTTCGAT
GGCGACGAAACGGTCTGATATTTACTCGTTAGGAATTGTGCTTTATGAGTTATTGACGGGGATGGTGCCTTTTGAAGGCG
AGTCCGCTGTTTCAATTGCGATTAAGCATTTCCAAGATGAAGTCCCACCAGTACGCAACTATGATCCACGTATTCCGCAA
GCCTTGGAAAATGTCGTCTTAAAAGCGACTGCCAAGGATCCGGATGAACGCTATAGTGGTGTTGATGCAATGATGGCTGA
CTTAGCAACTTCTTTATCAGCTAGTCGTGCGCACGAACCTAAATTTGTGCCATCAAAAGCGGATGATTTGAGTGAGACTA
AGGTGATTCCCGCACTAGATCCAGAAGGCATTACGCAAACCAACAATGATGAGGAACAAGTTAAAGAAGCAGAACCAACT
CAGAAAAAGGTTAAAAAGCCAGCTAAGTCTAAACGTAAGTGGTGGCTACTAGGTGGCGGTGTTGTTTTATTGCTGTTATT
AGCAACGGTGATTGCTTTTGCGGTTCAGGGGAGCGAAGTAACCGTCCCTGATTTAACGGATATGACACAACAAAATGCGG
AATCTGCTTTGACCGATAAAAAACTGAAGGTCGGTACGGTTCAAAAAACAACGAGTCAGAAATACAGTAAGGGCCACGTC
ATTCGAACAACACCTAAAGCGGGCCTGAGTGTAAAATCAAGAAGTACGGTTAATTTAATTGTCAGTTCAGGACGCCAAAA
GTATAAGATTAAAGACTATACGAACCAAGCATATAGTGATGTTCGGGATGCTTTGAAGGATAAAGGCTTGAAAGTTAAGC
GGAAATACCAAAGTTCATCTGAGGTGAGTCCTGGGTTGATTATCGATCAAAGTATTGCGGCTGGCAAAAGGGTCGTTCCA
AGTAAAACGACGATTACCTTAACAGTCAGCAGCGGCAAACCTGGTTTTGCATTGCATAATCTAAGCAACTATACAAAGCA
AGGGATTCAAGACTATGCTGCACAAAATGGTTTAACGGTCGTATTCTCTGAAGAATATTCATCAAGTATTTCTGAAGGAA
TGGTAATCAGTCAATCGCCTGCAAGTGGTACAATGGTTCAAGAAGGTGATAGCGTAAGCGTTATCCTTTCAAAAGGCGAG
CAACCAACTGAACATCATTCTGTTGTGACGTCGAGTTCAAATTCAGTTATCGAGTCGAGTGCGCCTGAATCAAGTCAATC
GAGTGAAAGTAGCGCGAGTGAGTCAGAGAGCGAATCAGAGAGTGAATCGGAAAGCGAATCAGCAAGTGAATCGATCAGTA
GTTCAGCTAGTCAAAGTAGTCAATCGAGCGTTCAATCAAAGTAA

Domains

Predicted by InterProScan.

Protein kinase domain (Pkinase)

(12-263)

PASTA domain (PASTA)

(429-490)

PASTA domain (PASTA)

(360-422)

PASTA domain (PASTA)

(500-558)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pknB Streptococcus mutans UA159

41.88

93.301

0.391
  stkP Streptococcus pneumoniae TIGR4

40.304

94.577

0.381
  stkP Streptococcus pneumoniae D39

40.135

94.577

0.38
  stkP Streptococcus pneumoniae R6

40.135

94.577

0.38
  stkP Streptococcus pneumoniae Rx1

39.966

94.577

0.378