Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   U0450_RS01720 Genome accession   NZ_CP139863
Coordinates   345264..346598 (-) Length   444 a.a.
NCBI ID   WP_050233562.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P2112     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context


Location: 340264..351598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0450_RS01705 - 341224..343674 (-) 2451 WP_000848712.1 bifunctional DnaQ family exonuclease/ATP-dependent helicase -
  U0450_RS01710 - 343874..344803 (-) 930 WP_000411866.1 peptidase U32 family protein -
  U0450_RS01715 - 344943..345230 (+) 288 WP_001145225.1 DUF3270 domain-containing protein -
  U0450_RS01720 ciaH 345264..346598 (-) 1335 WP_050233562.1 two-component system sensor histidine kinase CiaH Regulator
  U0450_RS01725 ciaR 346588..347262 (-) 675 WP_000590640.1 two-component system response regulator CiaR Regulator
  U0450_RS01730 - 347371..349917 (-) 2547 WP_001149118.1 M1 family metallopeptidase -
  U0450_RS01735 - 350040..350480 (-) 441 WP_000612882.1 ASCH domain-containing protein -
  U0450_RS01740 - 350455..351324 (-) 870 WP_001245821.1 putative PEP-binding protein -

Sequence


Protein


Download         Length: 444 a.a.        Molecular weight: 50663.35 Da        Isoelectric Point: 9.1661

>NTDB_id=911537 U0450_RS01720 WP_050233562.1 345264..346598(-) (ciaH) [Streptococcus pneumoniae strain 15P2112]
MFSKLKKTWYADDFSYFIRNFGVFTLIFSTMTLIILQVMHSSLYTSVDDKLHGLSENPQAVIQLAINRATEEIKDLENAR
ADASKVEIKPNVSSNTEVILFDKDFTQLLSGNRFLGLDKIKLEKKELGHIYQIQVFNSYGQEEIYRVILMETNISSVSTN
IKYAAVLINTSQLEQASQKHEQLIVVVMASFWILSLLASLYLARVSVRPLLESMQKQQSFVENASHELRTPLAVLQNRLE
TLFRKPEATIMDVSESIASSLEEVRNMRFLTTSLLNLARRDDGIKPELAEVPTSFFNTTFTNYEMIASENNRVFRFENRI
HRTIVTDQLLLKQLMTILFDNAVKYTEEDGEIDFLISATDRNLYLLVSDNGIGISTEDKKKIFDRFYRVDKARTRQKGGF
GLGLSLAKQIVDALKGTVTVKDNKSKGTIFEVKIAIQTPSKKKK

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=911537 U0450_RS01720 WP_050233562.1 345264..346598(-) (ciaH) [Streptococcus pneumoniae strain 15P2112]
ATGTTCAGTAAACTTAAAAAAACATGGTATGCGGATGACTTTAGTTATTTTATCCGCAACTTCGGTGTCTTCACCCTGAT
TTTTTCTACAATGACTCTGATTATTTTACAAGTCATGCATTCGAGTCTTTATACTTCGGTGGACGATAAGCTTCATGGAC
TGAGTGAAAATCCTCAAGCAGTTATTCAGCTGGCTATAAATAGGGCAACAGAAGAGATTAAAGATTTAGAAAATGCTAGG
GCGGACGCTAGTAAAGTAGAAATAAAACCTAATGTCAGTTCCAATACGGAAGTCATTCTCTTTGATAAAGACTTTACTCA
ACTTCTTTCTGGAAATCGATTTTTGGGCTTGGATAAGATTAAGTTAGAAAAGAAAGAACTAGGACATATCTACCAGATTC
AGGTTTTTAATAGCTATGGGCAGGAAGAAATCTATCGTGTGATTTTGATGGAGACCAATATTAGTTCGGTTTCAACCAAT
ATCAAGTATGCTGCTGTCTTGATTAATACCAGTCAGTTGGAGCAGGCTAGTCAAAAGCATGAGCAATTGATTGTGGTCGT
GATGGCTAGTTTCTGGATTTTGTCTTTACTTGCCAGTCTCTATCTAGCTAGGGTCAGTGTTAGGCCCCTGCTTGAGAGTA
TGCAGAAGCAACAGTCTTTTGTGGAAAATGCCAGTCATGAGTTACGAACTCCACTCGCAGTTTTGCAAAATCGCTTAGAG
ACCCTTTTTCGTAAGCCAGAAGCTACCATTATGGATGTGAGCGAAAGCATTGCATCGAGTTTGGAAGAAGTCCGAAATAT
GCGTTTTTTAACGACAAGCTTGCTGAACTTAGCTCGGAGAGATGATGGGATTAAGCCGGAGCTTGCAGAAGTTCCAACTA
GCTTTTTTAATACAACTTTCACAAACTACGAGATGATTGCTTCGGAAAATAATCGTGTCTTCCGTTTTGAAAATCGTATC
CATCGAACAATTGTCACAGATCAGCTTCTTCTGAAACAACTGATGACCATTCTTTTCGATAATGCCGTCAAGTATACTGA
GGAGGATGGTGAAATTGATTTTCTTATCTCGGCGACCGATCGCAATCTTTATTTACTTGTTTCTGATAATGGAATCGGTA
TTTCGACAGAAGATAAAAAGAAAATTTTTGACCGTTTTTATCGAGTAGACAAGGCTAGAACCCGGCAAAAAGGTGGTTTT
GGTTTAGGATTATCCCTAGCCAAGCAAATTGTAGATGCTCTAAAAGGAACTGTTACTGTCAAAGATAATAAATCCAAGGG
AACAATCTTTGAAGTGAAGATTGCCATTCAGACACCATCTAAAAAGAAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus pneumoniae Rx1

99.775

100

0.998

  ciaH Streptococcus pneumoniae D39

99.775

100

0.998

  ciaH Streptococcus pneumoniae R6

99.775

100

0.998

  ciaH Streptococcus pneumoniae TIGR4

99.775

100

0.998

  ciaH Streptococcus mutans UA159

55.402

97.973

0.543