Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   U0450_RS00490 Genome accession   NZ_CP139863
Coordinates   105468..106421 (-) Length   317 a.a.
NCBI ID   WP_000495922.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P2112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100468..111421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0450_RS00465 - 100954..101049 (-) 96 Protein_93 IS630 family transposase -
  U0450_RS00470 - 101464..101805 (+) 342 Protein_94 transposase -
  U0450_RS00475 prsA 101924..102865 (-) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  U0450_RS00480 - 102932..103645 (-) 714 WP_000230399.1 O-methyltransferase -
  U0450_RS00485 pepF 103647..105449 (-) 1803 WP_000244145.1 oligoendopeptidase F Regulator
  U0450_RS00490 coiA 105468..106421 (-) 954 WP_000495922.1 competence protein CoiA Machinery gene
  U0450_RS00495 tehB 106494..107354 (-) 861 WP_000413761.1 SAM-dependent methyltransferase TehB -
  U0450_RS00500 smpB 107370..107837 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  U0450_RS00505 rnr 107800..110154 (-) 2355 WP_050233546.1 ribonuclease R -
  U0450_RS00510 secG 110256..110489 (-) 234 WP_000282517.1 preprotein translocase subunit SecG -
  U0450_RS00515 rpmG 110529..110678 (-) 150 WP_001809104.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38278.91 Da        Isoelectric Point: 9.1156

>NTDB_id=911533 U0450_RS00490 WP_000495922.1 105468..106421(-) (coiA) [Streptococcus pneumoniae strain 15P2112]
MFVARDTRGELVNVLEDKLEKQAYTCPACGGQIHLRQGPSVRTHFAHKSLKDCDFFFENESPEHIANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYRNFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=911533 U0450_RS00490 WP_000495922.1 105468..106421(-) (coiA) [Streptococcus pneumoniae strain 15P2112]
ATGTTTGTTGCGAGAGATACTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGATCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACATAGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTGTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATTCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCGGAACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

98.423

100

0.984
  coiA Streptococcus pneumoniae Rx1

97.792

100

0.978
  coiA Streptococcus pneumoniae D39

97.792

100

0.978
  coiA Streptococcus pneumoniae R6

97.792

100

0.978
  coiA Streptococcus mitis NCTC 12261

88.644

100

0.886
  coiA Lactococcus lactis subsp. cremoris KW2

42.284

100

0.432