Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ABWI18_RS01100 Genome accession   NZ_CP159455
Coordinates   209250..211082 (+) Length   610 a.a.
NCBI ID   WP_001464440.1    Uniprot ID   -
Organism   Escherichia coli strain S6aCHROMc     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 204250..216082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWI18_RS01060 (ABWI18_01060) dcyD 204477..205463 (+) 987 WP_001373912.1 D-cysteine desulfhydrase -
  ABWI18_RS01065 (ABWI18_01065) tcyL 205478..206146 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ABWI18_RS01070 (ABWI18_01070) tcyN 206143..206895 (+) 753 WP_001461119.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ABWI18_RS01075 (ABWI18_01075) sdiA 207125..207847 (+) 723 WP_001461118.1 transcriptional regulator SdiA -
  ABWI18_RS01080 (ABWI18_01080) yecF 207914..208138 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ABWI18_RS01085 (ABWI18_01085) yecU 208125..208301 (-) 177 WP_001302050.1 protein YecU -
  ABWI18_RS01090 (ABWI18_01090) - 208339..208455 (-) 117 WP_001302039.1 hypothetical protein -
  ABWI18_RS01095 (ABWI18_01095) letA 208597..209253 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ABWI18_RS01100 (ABWI18_01100) uvrC 209250..211082 (+) 1833 WP_001464440.1 excinuclease ABC subunit UvrC Machinery gene
  ABWI18_RS01105 (ABWI18_01105) pgsA 211139..211684 (+) 546 WP_048948292.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABWI18_RS01125 (ABWI18_01125) yecA 212336..213001 (+) 666 WP_000847882.1 UPF0149 family protein YecA -
  ABWI18_RS01130 (ABWI18_01130) tyrP 213063..214274 (-) 1212 WP_000797560.1 tyrosine transporter TyrP -
  ABWI18_RS01135 (ABWI18_01135) yecH 214465..214704 (+) 240 WP_000377224.1 YecH family metal-binding protein -
  ABWI18_RS01140 (ABWI18_01140) ftnA 214742..215239 (-) 498 WP_000917208.1 non-heme ferritin -
  ABWI18_RS01145 (ABWI18_01145) yecR 215410..215733 (-) 324 WP_001237869.1 YecR-like lipofamily protein -
  ABWI18_RS01150 (ABWI18_01150) azuC 215996..216082 (+) 87 WP_010723106.1 stress response protein AzuC -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68206.06 Da        Isoelectric Point: 9.3685

>NTDB_id=911441 ABWI18_RS01100 WP_001464440.1 209250..211082(+) (uvrC) [Escherichia coli strain S6aCHROMc]
MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLL
EHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR
NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVT
EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLD
FNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDI
SHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQLAQAKNVFA
ELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLET
IEGVGPKRRQMLLKYMGGMQGLRNASVEEIAKVPGISQGLAEKIFWSLKH

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=911441 ABWI18_RS01100 WP_001464440.1 209250..211082(+) (uvrC) [Escherichia coli strain S6aCHROMc]
GTGAGTGATCAGTTTGACGCAAAAGCGTTTTTAAAAACCGTAACCAGCCAGCCTGGCGTTTATCGCATGTACGATGCTGG
TGGTACGGTTATCTATGTCGGCAAAGCGAAAGACCTGAAAAAACGGCTTTCCAGTTATTTCCGTAGCAACCTCGCTTCGC
GCAAAACCGAAGCGCTGGTCGCCCAGATCCAGCAAATTGATGTAACGGTTACTCATACAGAAACCGAAGCGCTGTTGCTG
GAACACAACTACATCAAACTCTATCAGCCGCGTTACAACGTTTTGCTACGCGATGATAAATCATATCCTTTTATCTTCCT
GAGTGGCGATACCCACCCGCGTCTGGCGATGCATCGTGGTGCGAAGCATGCCAAAGGTGAATATTTCGGCCCGTTCCCGA
ATGGCTATGCCGTACGTGAAACACTGGCGCTACTGCAAAAGATTTTCCCCATTCGCCAGTGCGAAAATAGTGTTTATCGC
AATCGCTCGCGTCCATGTCTGCAATATCAGATAGGGCGCTGTCTGGGACCGTGCGTTGAAGGACTGGTGAGTGAAGAAGA
ATACGCTCAGCAGGTCGAGTATGTGCGCCTGTTTTTGTCTGGCAAAGATGATCAGGTGCTTACGCAACTCATTAGCCGTA
TGGAAACTGCCAGCCAGAATCTGGAGTTTGAAGAAGCGGCACGTATTCGCGACCAAATTCAGGCGGTGCGACGCGTCACC
GAAAAACAGTTTGTGTCCAATACCGGCGACGACCTTGACGTTATTGGTGTGGCGTTCGATGCGGGCATGGCTTGTGTCCA
CGTATTGTTCATTCGTCAGGGCAAAGTGCTCGGCAGCCGCAGCTATTTCCCGAAAGTGCCTGGCGGTACGGAACTGAGCG
AGGTGGTGGAAACCTTCGTAGGTCAGTTCTATTTACAAGGCAGCCAGATGCGCACCTTACCGGGTGAGATCCTGCTCGAT
TTTAATCTTAGCGATAAAACGCTGCTCGCCGATTCCCTTTCAGAACTGGCGGGACGCAAGATTAATGTTCAAACCAAACC
TCGCGGCGATCGGGCGCGTTACCTGAAACTCGCGCGCACCAATGCGGCGACGGCCTTAACCAGCAAACTTTCGCAGCAAT
CTACCGTTCACCAGCGGCTTACAGCACTTGCCAGCGTGTTGAAATTGCCGGAAGTGAAGCGGATGGAGTGCTTTGACATC
AGCCATACCATGGGTGAACAAACCGTCGCTTCCTGTGTGGTGTTTGATGCTAACGGCCCGCTGCGTGCGGAGTATCGGCG
CTATAACATTACTGGCATCACGCCGGGCGATGATTATGCGGCGATGAATCAGGTGCTGCGTCGGCGTTATGGTAAAGCCA
TCGACGACAGTAAGATCCCGGATGTGATACTTATCGACGGCGGCAAAGGCCAGCTTGCGCAGGCGAAAAATGTTTTCGCC
GAACTGGATGTCTCATGGGATAAAAATCATCCGCTGCTACTTGGCGTTGCCAAAGGAGCAGATCGTAAGGCTGGGCTGGA
AACGCTGTTCTTTGAGCCGGAAGGTGAGGGATTCAGTTTGCCGCCAGATTCTCCCGCGCTGCATGTTATCCAGCATATTC
GCGATGAATCACATGATCACGCGATTGGCGGGCACCGTAAAAAACGGGCGAAGGTCAAAAATACCAGTTCCCTGGAAACC
ATTGAAGGCGTCGGGCCAAAACGCCGGCAAATGTTGTTGAAATATATGGGCGGTATGCAAGGTTTACGTAACGCCAGCGT
CGAGGAAATTGCAAAAGTGCCGGGTATTTCGCAAGGTCTGGCAGAAAAGATCTTCTGGTCGTTGAAACATTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)

GIY-YIG catalytic domain (GIY-YIG)

(18-93)

Helix-hairpin-helix domain (HHH_5)

(558-609)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.727

99.508

0.375
  uvrC Streptococcus pneumoniae R6

37.397

99.508

0.372
  uvrC Streptococcus pneumoniae D39

37.397

99.508

0.372