Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   U0447_RS07910 Genome accession   NZ_CP139861
Coordinates   1519192..1519923 (+) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae strain 16H2017-2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1514192..1524923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0447_RS07885 - 1515653..1516009 (+) 357 WP_000114422.1 hypothetical protein -
  U0447_RS07890 dnaJ 1516411..1517547 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  U0447_RS07895 - 1517881..1518255 (-) 375 WP_322396001.1 hypothetical protein -
  U0447_RS07900 - 1518417..1518704 (-) 288 WP_000777760.1 hypothetical protein -
  U0447_RS07905 - 1518714..1519124 (-) 411 WP_001278301.1 HIT family protein -
  U0447_RS07910 pptA 1519192..1519923 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  U0447_RS07915 - 1519920..1520969 (+) 1050 WP_050232591.1 ABC transporter permease -
  U0447_RS07920 - 1521137..1521466 (-) 330 WP_000132569.1 hypothetical protein -
  U0447_RS07925 - 1521742..1522080 (+) 339 WP_000682124.1 LytTR family DNA-binding domain-containing protein -
  U0447_RS07930 comE/blpR 1522085..1522822 (+) 738 WP_001219139.1 response regulator transcription factor Regulator
  U0447_RS07935 - 1522836..1524176 (+) 1341 WP_001017622.1 sensor histidine kinase -
  U0447_RS07940 blpC 1524218..1524373 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=911440 U0447_RS07910 WP_000889919.1 1519192..1519923(+) (pptA) [Streptococcus pneumoniae strain 16H2017-2]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=911440 U0447_RS07910 WP_000889919.1 1519192..1519923(+) (pptA) [Streptococcus pneumoniae strain 16H2017-2]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712