Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ABU610_RS02420 Genome accession   NZ_CP159333
Coordinates   520853..522943 (-) Length   696 a.a.
NCBI ID   WP_004920179.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain TLb2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 515853..527943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU610_RS02380 (ABU610_02380) - 516671..517318 (-) 648 WP_004920166.1 OmpA family protein -
  ABU610_RS02385 (ABU610_02385) - 517385..518536 (-) 1152 WP_004920167.1 class I SAM-dependent methyltransferase -
  ABU610_RS02405 (ABU610_02405) - 519082..519609 (+) 528 WP_004920168.1 shikimate kinase -
  ABU610_RS02410 (ABU610_02410) - 519581..520015 (-) 435 WP_004920171.1 RNA-binding S4 domain-containing protein -
  ABU610_RS02415 (ABU610_02415) - 520096..520815 (+) 720 WP_004920175.1 hypothetical protein -
  ABU610_RS02420 (ABU610_02420) recG 520853..522943 (-) 2091 WP_004920179.1 ATP-dependent DNA helicase RecG Machinery gene
  ABU610_RS02425 (ABU610_02425) - 523061..524002 (+) 942 WP_004920181.1 sulfate/molybdate ABC transporter ATP-binding protein -
  ABU610_RS02430 (ABU610_02430) - 524044..524382 (-) 339 WP_004920185.1 zinc ribbon domain-containing protein YjdM -
  ABU610_RS02435 (ABU610_02435) - 524510..525781 (-) 1272 WP_004920186.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  ABU610_RS02440 (ABU610_02440) - 525923..527413 (-) 1491 WP_004920188.1 M1 family aminopeptidase -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 79579.35 Da        Isoelectric Point: 9.7043

>NTDB_id=911224 ABU610_RS02420 WP_004920179.1 520853..522943(-) (recG) [Riemerella anatipestifer strain TLb2]
MTLETSIEYLKGVGPERAKLIKNLLGISTVEDLLTFYPIRYLDKSRLYRVADLQKNADVEMQLKGKIRELQEVVYGKGQK
RLSAKFYDETGVIELVWFRYTKWMVEQMPINKEVFIFGKVNWFNGVFSMPHPEIELDEKKALSETLLPIYSGSEKLIKRG
VNNKFFQTIIREVIKQASFFLEENLPSNILSSLKLIGRREAYQNIHFPQNISWINEANKRLKFEEAFFFQLGYGLKKQYQ
KVSNVGIPFPLVGDYFNNFYQNKLPFELTNAQKRVLKEIRNDMKKPIQMNRLLQGDVGSGKTMVALLSMLLALDNGTQAC
LMAPTEILAQQHYNSIVQLLEGTGIEIRLLTGSTKKSERKDIHEGLESGRLSILVGTHAILEDAVKFKNLGLGIIDEQHR
FGVAQRAKLWSKNKIPPHILIMTATPIPRTLAMSFYSDLDVSVIDELPTGRKPIITAHRREKDRLSVYQFAKEEIQKGRQ
IYFVYPLIEESETLDYKNLMEGFEIVLDYFKDYEVTMLHGKMKPHEKDEAMNYFASGKAQIMVATTVIEVGVNVPNASVM
VIESAERFGLSQLHQLRGRVGRGAEQSYCILMSSDKLSTEGRKRIKTMCETNDGFKISEVDMQLRGPGDILGTQQSGIVD
FKKLDLTKDASVIKVAQKIVTLLVQSDPNLTHPAHAQLRNYYIKQYKGKNKWGKIS

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=911224 ABU610_RS02420 WP_004920179.1 520853..522943(-) (recG) [Riemerella anatipestifer strain TLb2]
TTGACTTTAGAAACTTCCATAGAATACCTTAAAGGAGTAGGTCCAGAGCGGGCAAAACTCATCAAAAATCTGCTGGGAAT
AAGTACAGTGGAAGATTTGCTTACATTCTATCCAATAAGATATTTAGATAAAAGCCGACTGTATAGAGTAGCAGATTTGC
AGAAAAATGCAGATGTAGAGATGCAGTTAAAGGGTAAGATAAGAGAATTGCAGGAGGTGGTTTATGGTAAGGGACAAAAA
CGATTGTCTGCAAAATTCTACGATGAAACAGGCGTGATAGAACTGGTTTGGTTTAGATATACCAAATGGATGGTGGAGCA
GATGCCTATCAATAAAGAAGTATTTATTTTTGGTAAGGTCAATTGGTTTAATGGAGTTTTTTCTATGCCTCATCCAGAGA
TAGAGCTGGACGAAAAAAAAGCTCTGTCTGAAACTCTATTACCCATCTATTCAGGGAGTGAAAAGCTTATTAAAAGAGGG
GTTAATAATAAATTTTTCCAAACTATTATCAGGGAGGTTATTAAACAGGCTTCGTTCTTTTTAGAAGAAAATTTGCCGAG
TAATATCCTTAGTTCGCTTAAACTAATTGGTAGAAGAGAAGCTTATCAAAATATCCATTTTCCTCAAAATATAAGTTGGA
TAAATGAGGCTAATAAACGCCTGAAATTTGAGGAAGCCTTTTTCTTTCAGCTAGGATATGGTCTTAAAAAACAATATCAA
AAAGTATCCAATGTAGGAATTCCCTTTCCGTTAGTGGGAGATTATTTTAATAATTTTTATCAAAATAAATTACCTTTTGA
ACTCACTAACGCCCAAAAGCGAGTTCTAAAAGAAATTAGAAATGATATGAAAAAGCCTATCCAAATGAACAGGCTTTTGC
AGGGCGATGTAGGTTCGGGTAAAACTATGGTGGCGTTGCTTTCAATGCTATTGGCGTTGGATAATGGGACGCAGGCGTGC
CTTATGGCTCCCACGGAAATTTTGGCTCAACAACATTATAATAGCATCGTTCAACTTTTGGAAGGAACAGGCATCGAAAT
AAGGCTCTTAACAGGTTCTACAAAAAAATCGGAACGAAAAGATATTCACGAAGGATTAGAGTCTGGGAGATTGTCTATCT
TGGTAGGAACTCACGCCATATTAGAAGATGCGGTTAAGTTTAAAAATTTGGGCTTGGGCATTATAGACGAGCAACATCGT
TTTGGGGTGGCACAAAGAGCGAAACTTTGGTCTAAAAATAAAATTCCACCGCATATTTTAATTATGACGGCAACGCCCAT
TCCTAGAACTTTAGCGATGAGTTTTTATTCAGATTTAGATGTTTCGGTAATAGATGAGTTGCCGACGGGGAGAAAGCCTA
TCATTACGGCTCATAGGAGAGAAAAGGACAGACTTTCGGTTTACCAGTTTGCAAAGGAAGAAATCCAAAAAGGAAGGCAA
ATTTATTTTGTGTATCCACTAATAGAAGAGTCAGAAACTTTAGACTATAAAAACTTGATGGAAGGCTTTGAAATAGTGCT
AGACTATTTTAAAGATTACGAAGTTACCATGCTACACGGCAAAATGAAACCTCACGAAAAAGATGAAGCAATGAATTATT
TTGCTTCAGGTAAGGCTCAAATTATGGTAGCTACTACGGTTATAGAAGTGGGGGTAAATGTACCCAATGCTTCGGTAATG
GTAATAGAAAGTGCCGAAAGGTTTGGACTTTCACAGTTGCACCAACTTAGAGGTAGAGTGGGACGAGGGGCAGAGCAGAG
CTATTGTATTTTGATGTCCTCGGATAAACTATCCACGGAAGGGAGAAAACGAATTAAAACGATGTGCGAAACTAATGATG
GATTTAAAATCTCGGAGGTAGATATGCAACTTAGAGGTCCTGGGGATATATTGGGAACTCAGCAAAGTGGTATTGTAGAT
TTTAAAAAGTTGGATTTAACTAAAGATGCTTCGGTGATTAAAGTAGCACAGAAAATAGTAACCCTATTGGTTCAAAGCGA
CCCTAATTTAACTCACCCAGCACACGCTCAATTAAGAAATTACTACATAAAGCAATATAAAGGTAAAAACAAATGGGGAA
AAATCAGTTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(7-174)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(611-696)

Helicase conserved C-terminal domain (Helicase_C)

(473-583)

DEAD/DEAH box helicase (DEAD)

(270-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

41.594

99.138

0.412
  recG/mmsA Streptococcus pneumoniae R6

40.292

98.42

0.397
  recG/mmsA Streptococcus pneumoniae R36A

40.292

98.42

0.397
  recG Neisseria meningitidis strain C311

41.096

94.397

0.388