Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   U0543_RS12820 Genome accession   NZ_CP139836
Coordinates   2670615..2671097 (+) Length   160 a.a.
NCBI ID   WP_029424121.1    Uniprot ID   A0AAX0TXI4
Organism   Acinetobacter baumannii strain B84     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2665615..2676097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0543_RS12810 (U0543_12810) pilX 2665918..2666736 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  U0543_RS12815 (U0543_12815) pilY1 2666748..2670602 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  U0543_RS12820 (U0543_12820) pilY2 2670615..2671097 (+) 483 WP_029424121.1 type IV pilin protein Machinery gene
  U0543_RS12825 (U0543_12825) pilE 2671094..2671519 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene
  U0543_RS12830 (U0543_12830) rpsP 2671666..2671917 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  U0543_RS12835 (U0543_12835) rimM 2671937..2672485 (+) 549 WP_005130741.1 ribosome maturation factor RimM -
  U0543_RS12840 (U0543_12840) trmD 2672531..2673271 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  U0543_RS12845 (U0543_12845) rplS 2673479..2673847 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  U0543_RS12850 (U0543_12850) - 2673900..2674841 (-) 942 WP_086221420.1 triacylglycerol lipase -
  U0543_RS12855 (U0543_12855) - 2674956..2675987 (-) 1032 WP_029424123.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17630.92 Da        Isoelectric Point: 8.8351

>NTDB_id=911217 U0543_RS12820 WP_029424121.1 2670615..2671097(+) (pilY2) [Acinetobacter baumannii strain B84]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIVIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTRGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=911217 U0543_RS12820 WP_029424121.1 2670615..2671097(+) (pilY2) [Acinetobacter baumannii strain B84]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGTTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCAGAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCTGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

92.5

100

0.925
  comE Acinetobacter baylyi ADP1

38.953

100

0.419