Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   U0543_RS12810 Genome accession   NZ_CP139836
Coordinates   2665918..2666736 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain B84     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2660918..2671736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0543_RS12775 (U0543_12775) - 2661500..2661630 (-) 131 Protein_2496 hypothetical protein -
  U0543_RS12780 (U0543_12780) rpoZ 2661669..2661947 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  U0543_RS12785 (U0543_12785) gmk 2662020..2662649 (-) 630 WP_000015937.1 guanylate kinase -
  U0543_RS12790 (U0543_12790) ispH 2662772..2663722 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U0543_RS12795 (U0543_12795) fimU 2663892..2664365 (+) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  U0543_RS12800 (U0543_12800) pilV 2664359..2664919 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  U0543_RS12805 (U0543_12805) pilW 2664920..2665921 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  U0543_RS12810 (U0543_12810) pilX 2665918..2666736 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  U0543_RS12815 (U0543_12815) pilY1 2666748..2670602 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  U0543_RS12820 (U0543_12820) pilY2 2670615..2671097 (+) 483 WP_029424121.1 type IV pilin protein Machinery gene
  U0543_RS12825 (U0543_12825) pilE 2671094..2671519 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=911215 U0543_RS12810 WP_000149377.1 2665918..2666736(+) (pilX) [Acinetobacter baumannii strain B84]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=911215 U0543_RS12810 WP_000149377.1 2665918..2666736(+) (pilX) [Acinetobacter baumannii strain B84]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCTACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989