Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   U0543_RS12795 Genome accession   NZ_CP139836
Coordinates   2663892..2664365 (+) Length   157 a.a.
NCBI ID   WP_001214067.1    Uniprot ID   A0A7U3Y304
Organism   Acinetobacter baumannii strain B84     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2658892..2669365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0543_RS12770 (U0543_12770) - 2659355..2661460 (-) 2106 WP_029424120.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  U0543_RS12775 (U0543_12775) - 2661500..2661630 (-) 131 Protein_2496 hypothetical protein -
  U0543_RS12780 (U0543_12780) rpoZ 2661669..2661947 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  U0543_RS12785 (U0543_12785) gmk 2662020..2662649 (-) 630 WP_000015937.1 guanylate kinase -
  U0543_RS12790 (U0543_12790) ispH 2662772..2663722 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U0543_RS12795 (U0543_12795) fimU 2663892..2664365 (+) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  U0543_RS12800 (U0543_12800) pilV 2664359..2664919 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  U0543_RS12805 (U0543_12805) pilW 2664920..2665921 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  U0543_RS12810 (U0543_12810) pilX 2665918..2666736 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.40 Da        Isoelectric Point: 8.5355

>NTDB_id=911212 U0543_RS12795 WP_001214067.1 2663892..2664365(+) (fimU) [Acinetobacter baumannii strain B84]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=911212 U0543_RS12795 WP_001214067.1 2663892..2664365(+) (fimU) [Acinetobacter baumannii strain B84]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGGTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y304

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994