Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   U0542_RS08635 Genome accession   NZ_CP139831
Coordinates   1628357..1629175 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Nord12-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1623357..1634175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0542_RS08620 (U0542_08620) pilE 1623576..1624001 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  U0542_RS08625 (U0542_08625) pilY2 1623998..1624480 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  U0542_RS08630 (U0542_08630) pilY1 1624491..1628345 (-) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  U0542_RS08635 (U0542_08635) pilX 1628357..1629175 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  U0542_RS08640 (U0542_08640) pilW 1629172..1630173 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  U0542_RS08645 (U0542_08645) pilV 1630174..1630734 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  U0542_RS08650 (U0542_08650) fimU 1630728..1631201 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  U0542_RS08655 (U0542_08655) ispH 1631371..1632321 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U0542_RS08660 (U0542_08660) gmk 1632444..1633073 (+) 630 WP_000015937.1 guanylate kinase -
  U0542_RS08665 (U0542_08665) rpoZ 1633146..1633424 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  U0542_RS08670 (U0542_08670) - 1633463..1633593 (+) 131 Protein_1542 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=911144 U0542_RS08635 WP_000149374.1 1628357..1629175(-) (pilX) [Acinetobacter baumannii strain Nord12-3]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=911144 U0542_RS08635 WP_000149374.1 1628357..1629175(-) (pilX) [Acinetobacter baumannii strain Nord12-3]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993