Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   U0542_RS08625 Genome accession   NZ_CP139831
Coordinates   1623998..1624480 (-) Length   160 a.a.
NCBI ID   WP_001046489.1    Uniprot ID   A0A0J0ZLV7
Organism   Acinetobacter baumannii strain Nord12-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1618998..1629480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0542_RS08590 (U0542_08590) - 1619109..1620140 (+) 1032 WP_001189459.1 lipase secretion chaperone -
  U0542_RS08595 (U0542_08595) - 1620255..1621196 (+) 942 WP_085916958.1 triacylglycerol lipase -
  U0542_RS08600 (U0542_08600) rplS 1621248..1621616 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  U0542_RS08605 (U0542_08605) trmD 1621824..1622564 (-) 741 WP_000464595.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  U0542_RS08610 (U0542_08610) rimM 1622610..1623158 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  U0542_RS08615 (U0542_08615) rpsP 1623178..1623429 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  U0542_RS08620 (U0542_08620) pilE 1623576..1624001 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  U0542_RS08625 (U0542_08625) pilY2 1623998..1624480 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  U0542_RS08630 (U0542_08630) pilY1 1624491..1628345 (-) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  U0542_RS08635 (U0542_08635) pilX 1628357..1629175 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17657.94 Da        Isoelectric Point: 8.4737

>NTDB_id=911142 U0542_RS08625 WP_001046489.1 1623998..1624480(-) (pilY2) [Acinetobacter baumannii strain Nord12-3]
MNKYYILRFNQGFTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=911142 U0542_RS08625 WP_001046489.1 1623998..1624480(-) (pilY2) [Acinetobacter baumannii strain Nord12-3]
ATGAATAAGTACTACATTTTACGGTTCAATCAGGGTTTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZLV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

96.25

100

0.963
  comE Acinetobacter baylyi ADP1

41.86

100

0.45