Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   ABQ274_RS00805 Genome accession   NZ_CP159281
Coordinates   150307..151674 (+) Length   455 a.a.
NCBI ID   WP_058217241.1    Uniprot ID   -
Organism   Lactococcus lactis strain FNZ339     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 145307..156674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ274_RS00790 (ABQ274_00790) - 145985..148240 (+) 2256 WP_003130366.1 glycoside hydrolase family 65 protein -
  ABQ274_RS00795 (ABQ274_00795) - 148393..149367 (+) 975 WP_023164411.1 LacI family DNA-binding transcriptional regulator -
  ABQ274_RS00800 (ABQ274_00800) ciaR 149545..150213 (+) 669 WP_021722129.1 response regulator transcription factor Regulator
  ABQ274_RS00805 (ABQ274_00805) ciaH 150307..151674 (+) 1368 WP_058217241.1 HAMP domain-containing sensor histidine kinase Regulator
  ABQ274_RS00810 (ABQ274_00810) - 151822..153564 (+) 1743 WP_010906088.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABQ274_RS00815 (ABQ274_00815) yidD 153681..153947 (+) 267 WP_010906087.1 membrane protein insertion efficiency factor YidD -
  ABQ274_RS00820 (ABQ274_00820) - 154070..155504 (+) 1435 Protein_162 6-phospho-beta-glucosidase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 51230.77 Da        Isoelectric Point: 9.4771

>NTDB_id=911136 ABQ274_RS00805 WP_058217241.1 150307..151674(+) (ciaH) [Lactococcus lactis strain FNZ339]
MKKIIKKIKSSAIVKNDGKNFLHFFLAFTVIFVALAVIIIQVMQLGMYRATDQNLHNLAQNRVFLEEAANNQLGTSSSQD
SGFGPNNSVIFYDSEGKNFMPSTGSNANISTNFGMSLLQKAMKFNEKHINTIQTVSVKNPYGDNLHYRYYTTSQFIITNS
DGTVTPVYMQIFSNVDQIQDAMSRAMWVIVTTMITFWLLSIIISLYLANWTLRPILAAYEKQKEFVENASHELRTPLAIL
QNRLELLFQKPTATIIDESENISESLSEVRNMRLLTSNLLNLARRDSGIRIEPEATTATYFENIFNSYEMLAENAGKKFS
GHLKLDGTINLDQALIKQLLTILFDNALKYTGDEGEISVDVQKNGGFLVFAVADNGEGISDEDKKKIFDRFFRVDKARTR
QKGGLGLGLSLAKQIVEAYNGKITVEDNKPKGTKFIVRIRVDSTISNPTKIFQKL

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=911136 ABQ274_RS00805 WP_058217241.1 150307..151674(+) (ciaH) [Lactococcus lactis strain FNZ339]
TTGAAGAAAATAATTAAAAAAATTAAATCTTCAGCTATTGTAAAAAATGATGGGAAAAATTTCCTTCATTTTTTTCTAGC
TTTTACAGTCATTTTTGTTGCTTTAGCCGTGATTATTATTCAAGTCATGCAATTAGGAATGTATCGAGCGACTGACCAAA
ATTTACACAATTTGGCTCAAAACCGAGTGTTTTTGGAAGAAGCAGCGAATAATCAATTAGGAACAAGTAGTTCACAAGAC
AGTGGCTTTGGACCTAATAATAGTGTAATTTTTTATGATTCAGAAGGAAAAAACTTTATGCCGTCAACGGGCTCAAATGC
AAATATAAGTACAAACTTTGGCATGAGTCTTTTGCAAAAAGCAATGAAATTTAATGAAAAACATATAAATACAATTCAGA
CAGTATCTGTAAAAAATCCTTATGGAGATAATTTGCACTATCGTTATTACACAACATCGCAATTTATCATTACAAATTCT
GATGGTACTGTGACGCCAGTTTATATGCAAATTTTTTCAAACGTTGACCAAATTCAAGATGCCATGAGTCGTGCCATGTG
GGTCATTGTGACAACAATGATTACTTTCTGGCTACTATCAATAATTATTAGTTTGTATCTTGCAAATTGGACATTAAGAC
CTATTCTGGCCGCTTATGAAAAACAAAAAGAATTTGTTGAAAATGCTTCACATGAATTGAGAACACCTCTGGCAATCTTG
CAAAATCGTCTAGAATTACTTTTCCAAAAGCCAACTGCAACAATTATTGATGAATCAGAAAATATTTCTGAAAGTTTATC
TGAAGTTCGTAATATGCGTTTATTAACAAGTAACTTACTGAACTTAGCTCGTCGAGATTCTGGAATCAGAATTGAGCCAG
AGGCGACTACGGCAACTTATTTTGAGAATATTTTTAATAGCTATGAAATGCTTGCTGAAAACGCAGGTAAAAAGTTTTCA
GGCCATTTGAAATTAGATGGAACGATTAATTTGGACCAAGCCCTGATTAAACAATTGCTGACCATCTTATTTGATAATGC
TCTTAAATACACGGGTGATGAGGGTGAAATCTCTGTAGATGTTCAAAAAAATGGGGGATTCTTAGTTTTTGCTGTCGCCG
ATAATGGTGAAGGAATTTCTGATGAAGATAAGAAAAAAATCTTTGACCGCTTTTTCCGAGTAGATAAAGCAAGAACGCGT
CAAAAAGGTGGCTTAGGTTTGGGTCTTTCTCTGGCCAAACAAATTGTTGAAGCTTACAATGGGAAGATTACAGTTGAAGA
TAATAAACCTAAAGGTACAAAATTCATTGTTAGAATTCGTGTGGATAGCACAATTTCAAATCCTACAAAAATTTTCCAAA
AGTTGTAA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(222-288)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(332-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

48.372

94.505

0.457
  ciaH Streptococcus pneumoniae Rx1

44.444

98.901

0.44
  ciaH Streptococcus pneumoniae D39

44.444

98.901

0.44
  ciaH Streptococcus pneumoniae R6

44.444

98.901

0.44
  ciaH Streptococcus pneumoniae TIGR4

44.444

98.901

0.44