Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PsasTeo6_RS07450 Genome accession   NZ_CP139776
Coordinates   1624790..1627003 (+) Length   737 a.a.
NCBI ID   WP_322265406.1    Uniprot ID   -
Organism   Pseudomonas asiatica strain Teo6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619790..1632003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PsasTeo6_RS07430 (PsasTeo6_11880) - 1621655..1622278 (+) 624 WP_322265405.1 glutathione S-transferase -
  PsasTeo6_RS07435 (PsasTeo6_11888) - 1622423..1623355 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  PsasTeo6_RS07440 (PsasTeo6_11896) - 1623352..1624131 (+) 780 WP_003260104.1 ABC transporter permease -
  PsasTeo6_RS07445 (PsasTeo6_11904) - 1624141..1624647 (-) 507 Protein_1445 DUF2062 domain-containing protein -
  PsasTeo6_RS07450 (PsasTeo6_11912) comA 1624790..1627003 (+) 2214 WP_322265406.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PsasTeo6_RS07455 (PsasTeo6_11920) exbB 1627222..1627857 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PsasTeo6_RS07460 (PsasTeo6_11928) - 1627854..1628288 (+) 435 WP_013971564.1 biopolymer transporter ExbD -
  PsasTeo6_RS07465 (PsasTeo6_11936) lpxK 1628288..1629289 (+) 1002 WP_123083910.1 tetraacyldisaccharide 4'-kinase -
  PsasTeo6_RS07470 (PsasTeo6_11944) - 1629334..1629519 (+) 186 WP_011532874.1 Trm112 family protein -
  PsasTeo6_RS07475 (PsasTeo6_11952) kdsB 1629516..1630280 (+) 765 WP_039614724.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PsasTeo6_RS07480 (PsasTeo6_11960) - 1630280..1630744 (+) 465 WP_322265407.1 low molecular weight protein-tyrosine-phosphatase -
  PsasTeo6_RS07485 (PsasTeo6_11968) murB 1630741..1631760 (+) 1020 WP_061552362.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79352.14 Da        Isoelectric Point: 10.5462

>NTDB_id=910907 PsasTeo6_RS07450 WP_322265406.1 1624790..1627003(+) (comA) [Pseudomonas asiatica strain Teo6]
MRTGMFALALGLLCLGFLPALPSVGWLVLLAVAGGLGLFTRLWPLGCFLLGLCWACWSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDTLRQRLLAVEANGRQAAMVALVLGDGTGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGSGVPVQRACLMLAVVLLWRLRFRQLGATLPLLLALVAVLLLEPL
AALLPGFWLSFAAVATLVYCFSARLGSWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGALLLPLGGVGEALLWLAGGLLDVLFRLLALAAQQPAWLPPALPLWAWLLVCLGALLVLMPRGVPLRGLGGVMLLALWV
PRETVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMLVSHAHADHAGGAGA
IMRGLPVERVIGGEVLDGLQLQPCASGEQWTWDGVRFSLWRWADGQSSNDRSCALLVEAQGERLLLAGDMEAGAERAWLA
ATEAPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHSQVVERYRRHGVVMHDTAEQGALRLVLGRLGE
VESVRRQRRFWRDAGGG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=910907 PsasTeo6_RS07450 WP_322265406.1 1624790..1627003(+) (comA) [Pseudomonas asiatica strain Teo6]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGTCTGGGCTTTCTCCCCGCATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTGTAGCCGGTGGCCTCGGCCTGTTTACCCGGCTGTGGCCACTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCCTGCTGGTCTGCGCAGCAGGCGCTGGATGACCGCCTGGCAACCGGGCTGGATGGCCGCACCTTGTGGCTTGAGGGC
CGGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGCCCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGCCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTCGA
GGCCAATGGCCGGCAGGCAGCGATGGTGGCGCTGGTGCTTGGCGACGGGACGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACCTGTTGGTGATCTCTGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGGTTGCCGTGGCTGCCCTGGGCGTGTGGCTTGGCCATGGCTGC
GGCACTGGCCTACGGTTGGTTGGCTGGTAGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCAACTGGGTGCGACCTTGCCGTTGTTGCTGGCGCTGGTTGCCGTACTGTTGCTGGAACCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTATCGTTCGCGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGCCTGGGCAG
TTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCGATCGGCTTGCTGCCGGTACTGCTGGCTACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCGTGGGTCAGCTTGGCAGTGCTGCCATTGGCGTTG
CTGGGCGCTTTGCTGCTGCCGTTGGGCGGGGTAGGGGAGGCGCTGCTCTGGCTGGCGGGCGGTTTGCTTGATGTGCTTTT
CCGGCTGCTGGCGCTGGCGGCGCAGCAGCCGGCGTGGCTGCCACCAGCCCTGCCGTTGTGGGCCTGGCTGCTGGTGTGCC
TGGGCGCGCTGCTGGTTTTGATGCCCCGTGGCGTACCACTGCGCGGGTTGGGTGGCGTAATGCTGCTGGCGCTGTGGGTA
CCTCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAAGGGCTGGCGGTGCTTTTGCGCAC
CCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGAGAGAGCGATCTGGGCGAGCGGGTGGTGTTGCCGACCT
TGCGCAAGCTGGGGGTGGGTAGCCTGGACTTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGCGCA
ATCATGCGTGGCCTGCCGGTCGAACGGGTGATCGGCGGCGAAGTGCTGGATGGCCTGCAACTGCAACCTTGCGCCAGTGG
CGAGCAATGGACGTGGGATGGTGTGCGCTTTTCGCTGTGGCGCTGGGCTGATGGACAGAGCAGCAATGACCGCTCCTGCG
CGTTGCTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGACATGGAGGCCGGTGCCGAACGGGCCTGGCTGGCG
GCCACAGAAGCGCCGCGGATCGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCATCCG
TGCCACGGCGCCGCGCGGGGTACTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCGCACTCGCAGGTGGTCGAAC
GTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGGGAG
GTCGAGAGTGTGCGCCGACAGCGGCGTTTCTGGAGGGATGCGGGCGGTGGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-673)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.558

0.583
  comA Ralstonia pseudosolanacearum GMI1000

34.522

100

0.368