Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PsasTeo6_RS07455 Genome accession   NZ_CP139776
Coordinates   1627222..1627857 (+) Length   211 a.a.
NCBI ID   WP_003259970.1    Uniprot ID   V9UW47
Organism   Pseudomonas asiatica strain Teo6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1622222..1632857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PsasTeo6_RS07435 (PsasTeo6_11888) - 1622423..1623355 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  PsasTeo6_RS07440 (PsasTeo6_11896) - 1623352..1624131 (+) 780 WP_003260104.1 ABC transporter permease -
  PsasTeo6_RS07445 (PsasTeo6_11904) - 1624141..1624647 (-) 507 Protein_1445 DUF2062 domain-containing protein -
  PsasTeo6_RS07450 (PsasTeo6_11912) comA 1624790..1627003 (+) 2214 WP_322265406.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PsasTeo6_RS07455 (PsasTeo6_11920) exbB 1627222..1627857 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PsasTeo6_RS07460 (PsasTeo6_11928) - 1627854..1628288 (+) 435 WP_013971564.1 biopolymer transporter ExbD -
  PsasTeo6_RS07465 (PsasTeo6_11936) lpxK 1628288..1629289 (+) 1002 WP_123083910.1 tetraacyldisaccharide 4'-kinase -
  PsasTeo6_RS07470 (PsasTeo6_11944) - 1629334..1629519 (+) 186 WP_011532874.1 Trm112 family protein -
  PsasTeo6_RS07475 (PsasTeo6_11952) kdsB 1629516..1630280 (+) 765 WP_039614724.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PsasTeo6_RS07480 (PsasTeo6_11960) - 1630280..1630744 (+) 465 WP_322265407.1 low molecular weight protein-tyrosine-phosphatase -
  PsasTeo6_RS07485 (PsasTeo6_11968) murB 1630741..1631760 (+) 1020 WP_061552362.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=910908 PsasTeo6_RS07455 WP_003259970.1 1627222..1627857(+) (exbB) [Pseudomonas asiatica strain Teo6]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRVSRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=910908 PsasTeo6_RS07455 WP_003259970.1 1627222..1627857(+) (exbB) [Pseudomonas asiatica strain Teo6]
GTGTGGGAATTGGTCAAGTCCGGCGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACGCTGCGCGTCAGTCGCGTCACCCCGCCGCACCTGCTCGGTCAGGTGTGGATATGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTCGCCGCCGGCCTGGCCAAC
TCGCGCCATGGTCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGCGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCTGCGCCGTATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCTATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9UW47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829