Detailed information NTG0910901

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PsasTeo6_RS03475
• Genome accession: NZ_CP139776
• Coordinates: 747499..748365 (-)
• Length: 288 a.a.
• NCBI ID: WP_038408633.1
• Uniprot ID: -
• Organism: Pseudomonas asiatica strain Teo6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 742499..753365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PsasTeo6_RS03440 (PsasTeo6_05464)	-	742946..744241 (-)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-
PsasTeo6_RS03445 (PsasTeo6_05472)	-	744326..744499 (-)	174	WP_013970765.1	DUF3094 family protein	-
PsasTeo6_RS03450 (PsasTeo6_05480)	-	744633..745262 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
PsasTeo6_RS03455 (PsasTeo6_05488)	-	745318..745749 (-)	432	WP_015268860.1	hypothetical protein	-
PsasTeo6_RS03460 (PsasTeo6_05496)	-	745836..746543 (+)	708	WP_322265223.1	energy-coupling factor ABC transporter permease	-
PsasTeo6_RS03465 (PsasTeo6_05504)	yacG	746679..746879 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
PsasTeo6_RS03470 (PsasTeo6_05512)	coaE	746876..747499 (-)	624	WP_013970769.1	dephospho-CoA kinase	-
PsasTeo6_RS03475 (PsasTeo6_05520)	pilD	747499..748365 (-)	867	WP_038408633.1	A24 family peptidase	Machinery gene
PsasTeo6_RS03480 (PsasTeo6_05528)	-	748368..749576 (-)	1209	WP_247846870.1	type II secretion system F family protein	-
PsasTeo6_RS03485 (PsasTeo6_05536)	pilA	749792..750202 (+)	411	WP_047934243.1	pilin	Machinery gene
PsasTeo6_RS03495 (PsasTeo6_05552)	-	750514..751842 (+)	1329	WP_322265224.1	phage integrase central domain-containing protein	-
PsasTeo6_RS03500	-	752736..752909 (+)	174	Protein_667	integrase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32031.21 Da
• Isoelectric Point: 7.9596

>NTDB_id=910901 PsasTeo6_RS03475 WP_038408633.1 747499..748365(-) (pilD) [Pseudomonas asiatica strain Teo6]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=910901 PsasTeo6_RS03475 WP_038408633.1 747499..748365(-) (pilD) [Pseudomonas asiatica strain Teo6]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAGT
TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGTGCGCATCGGATTCGCGCA
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAAGACCCGCATCAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CCCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTCGGCCTCTACGTCCCGCTGACCAGTGCGTTGTGGGGCGCGGTGGC
TGGGTACCTCAGCCTTTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGTTGTCGTCAGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCGATGGGCACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCTTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.909	95.486	0.524
pilD	Acinetobacter baumannii D1279779	52.5	97.222	0.51
pilD	Acinetobacter nosocomialis M2	51.786	97.222	0.503
pilD	Vibrio campbellii strain DS40M4	50.534	97.569	0.493
pilD	Neisseria gonorrhoeae MS11	51.698	92.014	0.476