Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   UM396_RS18020 Genome accession   NZ_CP139723
Coordinates   3526714..3527208 (-) Length   164 a.a.
NCBI ID   WP_063167101.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain OXR-76     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3521714..3532208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UM396_RS18000 (UM396_18000) rplI 3522715..3523164 (-) 450 WP_063167104.1 50S ribosomal protein L9 -
  UM396_RS18005 (UM396_18005) - 3523161..3525137 (-) 1977 WP_322310683.1 DHH family phosphoesterase -
  UM396_RS18010 (UM396_18010) - 3525184..3526110 (-) 927 WP_063167102.1 YybS family protein -
  UM396_RS18015 (UM396_18015) rpsR 3526196..3526432 (-) 237 WP_008880812.1 30S ribosomal protein S18 -
  UM396_RS18020 (UM396_18020) ssbA 3526714..3527208 (-) 495 WP_063167101.1 single-stranded DNA-binding protein Machinery gene
  UM396_RS18025 (UM396_18025) rpsF 3527238..3527525 (-) 288 WP_168367986.1 30S ribosomal protein S6 -
  UM396_RS18030 (UM396_18030) ychF 3527751..3528851 (-) 1101 WP_322310684.1 redox-regulated ATPase YchF -
  UM396_RS18035 (UM396_18035) - 3528949..3529392 (-) 444 Protein_3488 molybdopterin dinucleotide binding domain-containing protein -
  UM396_RS18040 (UM396_18040) - 3529349..3529645 (-) 297 WP_082816588.1 hypothetical protein -
  UM396_RS18045 (UM396_18045) - 3529635..3529832 (-) 198 WP_063167096.1 DUF951 domain-containing protein -
  UM396_RS18050 (UM396_18050) - 3529848..3530744 (-) 897 WP_063167095.1 mechanosensitive ion channel family protein -
  UM396_RS18055 (UM396_18055) yyaC 3530924..3531547 (+) 624 WP_322310685.1 spore protease YyaC -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18400.34 Da        Isoelectric Point: 4.7055

>NTDB_id=910746 UM396_RS18020 WP_063167101.1 3526714..3527208(-) (ssbA) [Geobacillus subterraneus strain OXR-76]
MINRVILVGRLTKDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADNVQFLEPKGSNEQRGAAAGGYYGDPFPFGQDQNHRYPNEKGFGRIDEDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=910746 UM396_RS18020 WP_063167101.1 3526714..3527208(-) (ssbA) [Geobacillus subterraneus strain OXR-76]
ATGATTAACCGTGTCATCTTAGTCGGCAGGTTAACGAAAGATCCGGAGTTGCGCTACACTCCAAGCGGAGTGGCTGTTGC
CACGTTTACGCTCGCGGTCAACCGCCCGTTCACGAACCAGCAGGGCGAGCGGGAAGCCGATTTTATCCAATGCGTCGTTT
GGCGTCGCCAGGCGGAAAACGTCGCCAACTTCTTGAAAAAAGGAAGCTTGGCCGGGGTGGACGGCCGGCTGCAAACCCGC
AGCTATGAAAACCAAGAAGGCCGGCGCGTGTATGTGACGGAAGTGGTGGCTGATAACGTCCAATTTCTTGAGCCAAAAGG
AAGCAACGAGCAACGAGGGGCAGCAGCGGGCGGCTACTATGGGGATCCATTCCCATTCGGACAAGATCAGAACCACCGAT
ATCCGAATGAAAAAGGGTTTGGCCGCATCGATGAAGATCCTTTCGCCAATGACGGCCAGCCGATCGATATTTCTGACGAT
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.571

100

0.732
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.622
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

64.634

0.421