Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   UM396_RS12340 Genome accession   NZ_CP139723
Coordinates   2410037..2410333 (-) Length   98 a.a.
NCBI ID   WP_082816525.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain OXR-76     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2405037..2415333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UM396_RS12305 (UM396_12305) - 2405612..2407276 (+) 1665 WP_168368780.1 DEAD/DEAH box helicase -
  UM396_RS12310 (UM396_12310) - 2407263..2408057 (+) 795 WP_322310279.1 YqhG family protein -
  UM396_RS12315 (UM396_12315) - 2408133..2408312 (-) 180 WP_081209484.1 YqzE family protein -
  UM396_RS12320 (UM396_12320) comGG 2408358..2408747 (-) 390 WP_168368781.1 competence type IV pilus minor pilin ComGG -
  UM396_RS12325 (UM396_12325) comGF 2408878..2409321 (-) 444 WP_168368782.1 competence type IV pilus minor pilin ComGF -
  UM396_RS12330 (UM396_12330) - 2409300..2409626 (-) 327 WP_063165285.1 hypothetical protein -
  UM396_RS12335 (UM396_12335) comGD 2409610..2410053 (-) 444 WP_225995614.1 competence type IV pilus minor pilin ComGD -
  UM396_RS12340 (UM396_12340) comGC 2410037..2410333 (-) 297 WP_082816525.1 competence type IV pilus major pilin ComGC Machinery gene
  UM396_RS12345 (UM396_12345) comGB 2410402..2411430 (-) 1029 WP_168368783.1 competence type IV pilus assembly protein ComGB -
  UM396_RS12350 (UM396_12350) comGA 2411427..2412497 (-) 1071 WP_063165283.1 competence type IV pilus ATPase ComGA Machinery gene
  UM396_RS12355 (UM396_12355) - 2412698..2413396 (+) 699 WP_168368784.1 metalloregulator ArsR/SmtB family transcription factor -
  UM396_RS12360 (UM396_12360) - 2413558..2413800 (+) 243 WP_008879854.1 DUF2626 family protein -
  UM396_RS12365 (UM396_12365) - 2413831..2414958 (-) 1128 WP_063165281.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10826.59 Da        Isoelectric Point: 5.0629

>NTDB_id=910725 UM396_RS12340 WP_082816525.1 2410037..2410333(-) (comGC) [Geobacillus subterraneus strain OXR-76]
MNEKGFTLIEMLIVLMVISVLLLVAIPNITKHNGMINTKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLDGRYIKSDKCP
NGHAIEINENGDVSEVGS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=910725 UM396_RS12340 WP_082816525.1 2410037..2410333(-) (comGC) [Geobacillus subterraneus strain OXR-76]
GTGAACGAAAAAGGGTTTACCCTCATTGAAATGCTCATTGTGCTAATGGTCATTTCCGTGCTGCTGTTAGTGGCGATTCC
GAACATCACGAAGCATAACGGCATGATTAACACCAAAGGATGCGAGGCATTTTTGAACACAGTGCAGGCGCAAGTGAAGG
CATATGAGATGGAGCATAACAAAATTCCAACCGTGCAGGAATTGCTTGATGGCCGCTATATTAAATCGGACAAATGTCCG
AACGGTCACGCGATCGAAATCAATGAGAACGGCGATGTGAGTGAAGTTGGCTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

55.172

88.776

0.49
  comGC Staphylococcus aureus MW2

40.86

94.898

0.388
  comGC Staphylococcus aureus N315

40.86

94.898

0.388