Detailed information NTG0910689

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: T8T98_RS08765
• Genome accession: NZ_CP139719
• Coordinates: 1802861..1803295 (+)
• Length: 144 a.a.
• NCBI ID: WP_407675019.1
• Uniprot ID: -
• Organism: Pelagerythrobacter marinus strain OXR-96
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1797861..1808295

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
T8T98_RS08710 (T8T98_08710)	-	1797892..1798155 (+)	264	WP_160732394.1	hypothetical protein	-
T8T98_RS08715 (T8T98_08715)	-	1798201..1798509 (-)	309	WP_322295575.1	GIY-YIG nuclease family protein	-
T8T98_RS08720 (T8T98_08720)	-	1798506..1798712 (-)	207	WP_322295576.1	hypothetical protein	-
T8T98_RS08725 (T8T98_08725)	-	1798809..1799180 (+)	372	WP_322295577.1	helix-turn-helix transcriptional regulator	-
T8T98_RS08730 (T8T98_08730)	-	1799366..1800070 (+)	705	WP_322295578.1	hypothetical protein	-
T8T98_RS08735 (T8T98_08735)	-	1800067..1800387 (+)	321	WP_322295579.1	hypothetical protein	-
T8T98_RS08740 (T8T98_08740)	-	1800384..1800701 (+)	318	WP_322295580.1	hypothetical protein	-
T8T98_RS08745 (T8T98_08745)	-	1800701..1800997 (+)	297	WP_322295581.1	hypothetical protein	-
T8T98_RS08750 (T8T98_08750)	-	1800994..1801161 (+)	168	WP_322295582.1	hypothetical protein	-
T8T98_RS08755 (T8T98_08755)	-	1801151..1801909 (+)	759	WP_322295583.1	ERF family protein	-
T8T98_RS08760 (T8T98_08760)	-	1801923..1802861 (+)	939	WP_322295584.1	hypothetical protein	-
T8T98_RS08765 (T8T98_08765)	ssb	1802861..1803295 (+)	435	WP_407675019.1	single-stranded DNA-binding protein	Machinery gene
T8T98_RS16340	-	1803306..1803755 (+)	450	WP_407675120.1	HNH endonuclease signature motif containing protein	-
T8T98_RS08770 (T8T98_08770)	-	1803960..1804295 (+)	336	WP_322295585.1	hypothetical protein	-
T8T98_RS08775 (T8T98_08775)	-	1804443..1804835 (+)	393	WP_322295586.1	hypothetical protein	-
T8T98_RS08780 (T8T98_08780)	-	1804828..1805175 (+)	348	WP_322295587.1	hypothetical protein	-
T8T98_RS08785 (T8T98_08785)	-	1805217..1806122 (+)	906	WP_322295588.1	DHHA1 domain-containing protein	-
T8T98_RS08790 (T8T98_08790)	-	1806236..1806454 (+)	219	WP_322295589.1	hypothetical protein	-
T8T98_RS08795 (T8T98_08795)	-	1806447..1806716 (+)	270	WP_322295590.1	hypothetical protein	-
T8T98_RS08800 (T8T98_08800)	-	1806891..1807889 (+)	999	WP_322295591.1	tyrosine-type recombinase/integrase	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 15846.48 Da
• Isoelectric Point: 4.9264

>NTDB_id=910689 T8T98_RS08765 WP_407675019.1 1802861..1803295(+) (ssb) [Pelagerythrobacter marinus strain OXR-96]
MASLNQVSLLGNLCADVETRSFQNGGSVANFRLATNESWKDKNTGERKERVEYHSIAIFNEGLVRVASEYLRKGSKVFVQ
GKLQTRKWQDQQGNDRYSTEVVLQGFDAKLVMLDGAPGGGSTSNTGGDWQQNAPADDLDDSIPF

Nucleotide

• Length: 435 bp

>NTDB_id=910689 T8T98_RS08765 WP_407675019.1 1802861..1803295(+) (ssb) [Pelagerythrobacter marinus strain OXR-96]
ATGGCATCGCTCAATCAAGTCAGCCTGCTCGGCAATCTCTGTGCCGACGTGGAAACCCGTAGCTTCCAGAACGGTGGCAG
CGTGGCCAACTTCCGCCTCGCGACAAACGAAAGCTGGAAGGACAAGAACACCGGCGAACGGAAGGAGCGCGTCGAATATC
ATTCGATAGCGATCTTCAACGAAGGCCTTGTTCGTGTCGCCAGCGAATATCTCCGCAAGGGCAGCAAGGTTTTCGTGCAG
GGCAAGCTCCAAACGCGCAAGTGGCAGGACCAGCAGGGCAACGATCGGTATTCCACTGAGGTCGTTTTGCAGGGCTTCGA
TGCGAAGCTTGTGATGCTCGACGGTGCGCCCGGCGGCGGCAGCACATCCAACACCGGTGGCGACTGGCAACAGAACGCGC
CTGCCGATGACCTCGACGACTCGATCCCATTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-104)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	44.382	100	0.549
ssb	Glaesserella parasuis strain SC1401	50	95.833	0.479
ssb	Neisseria gonorrhoeae MS11	39.259	93.75	0.368