Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   SPL95_RS18815 Genome accession   NZ_CP139639
Coordinates   4093984..4096209 (-) Length   741 a.a.
NCBI ID   WP_323986500.1    Uniprot ID   -
Organism   Pseudomonas canadensis strain Pcan-CK-23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4088984..4101209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPL95_RS18780 (SPL95_18780) murB 4089389..4090408 (-) 1020 WP_028616765.1 UDP-N-acetylmuramate dehydrogenase -
  SPL95_RS18785 (SPL95_18785) - 4090405..4090869 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  SPL95_RS18790 (SPL95_18790) kdsB 4090869..4091633 (-) 765 WP_028616766.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SPL95_RS18795 (SPL95_18795) - 4091630..4091815 (-) 186 WP_003174668.1 Trm112 family protein -
  SPL95_RS18800 (SPL95_18800) lpxK 4091840..4092850 (-) 1011 WP_028616767.1 tetraacyldisaccharide 4'-kinase -
  SPL95_RS18805 (SPL95_18805) - 4092850..4093278 (-) 429 WP_010209650.1 ExbD/TolR family protein -
  SPL95_RS18810 (SPL95_18810) exbB 4093275..4093910 (-) 636 WP_016978182.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SPL95_RS18815 (SPL95_18815) comA 4093984..4096209 (-) 2226 WP_323986500.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SPL95_RS18820 (SPL95_18820) - 4096345..4096860 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  SPL95_RS18825 (SPL95_18825) - 4096857..4098227 (-) 1371 WP_122683830.1 histidine kinase sensor domain-containing protein -
  SPL95_RS18830 (SPL95_18830) - 4098214..4098942 (-) 729 WP_068936835.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80405.36 Da        Isoelectric Point: 10.4025

>NTDB_id=910393 SPL95_RS18815 WP_323986500.1 4093984..4096209(-) (comA) [Pseudomonas canadensis strain Pcan-CK-23]
MRTGMCAFALGLLALRFLPALPTTGWLIALLVLALMLLPFRTYPLAFFLFGLSWACMSAQWALDDRLKPVLDGQTRWVEG
RVSGLPQQTDEGVRFVLTDSRSRNARLPTHIRVSWRGGPPVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPAANAWRDSVRQRLLAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFTTALGYGLLAGFGVPVQRACVMVGLVLLWRLRLRHLGLWWPLLLALNGVLILEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQVWTRPQWLIAIGLFPALLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLALPFVGEGLLWLAGGALGALFNGLAWLAGQMPAWIPADVPLGCWLVSLLGAVLLLLPKGVPFRVLGWPMFLLAV
FPPRALVPDGQVEVTQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLRKLGVGELDMLLLSHADADHAGGA
AAIANGMPIKRVVGGETEGLPPSLATQPCTSGERWIWDGVTFELWQWPDAISGNAKSCVLQVQANGERLLLTGDIGRAAE
QAMLASPLAVPTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRNNAFGHPHPQVMERYQRLGSQVYDSAEQGAVRLQL
GAFTPPIVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=910393 SPL95_RS18815 WP_323986500.1 4093984..4096209(-) (comA) [Pseudomonas canadensis strain Pcan-CK-23]
ATGAGGACAGGGATGTGCGCGTTTGCGCTGGGGCTGCTGGCCTTGCGCTTTTTACCGGCATTGCCGACGACCGGTTGGCT
GATCGCCTTGCTGGTGCTGGCCCTGATGCTGTTGCCGTTTCGCACGTATCCCTTGGCTTTTTTCCTGTTTGGGCTGAGTT
GGGCGTGCATGAGCGCGCAGTGGGCGCTGGATGATCGCCTCAAGCCAGTACTGGACGGTCAGACGCGCTGGGTGGAAGGG
CGGGTCAGCGGGCTTCCGCAACAGACGGACGAGGGCGTGCGCTTTGTACTGACCGACAGTCGGTCGCGTAATGCCCGGTT
GCCCACGCACATCCGGGTGTCCTGGCGTGGCGGGCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCCGTCACCCTCA
AGCGGCCCGCCGGGTTGCTGAACTTCCACGGCTTTGATCAGGAGGCTTGGCTGCTGGCCCAGCGCATTGGCGCCACCGGT
ACGGTAAAGGATGGAGAGCGCCTGGCACCGGCTGCCAACGCCTGGCGCGACAGTGTGCGTCAGCGTTTGCTTGCGGTGGA
CGCCCAAGGCCGGGAGGCTGGCCTGATTGCCCTGGTGTTGGGCGATGGCTCTGGATTGGCGGCTGCTGATTGGCAGGTGC
TGCAGGACACAGGGACTGTGCATTTGCTGGTCATCTCCGGCCAGCATATCGGCCTGCTGGCGGGGTTGATTTACGGTTTG
ATCGCTGGCTTGGCGCGCTATGGATGCTGGCCTCGAACCTGGCCATGGCTGCCCTGGGCTTGTGGGCTGGCGTTCACTAC
GGCGCTGGGTTACGGCTTGCTGGCTGGATTTGGCGTGCCGGTGCAGCGCGCCTGCGTGATGGTTGGGCTGGTGTTGTTGT
GGCGATTGCGCTTGCGTCACCTGGGGCTGTGGTGGCCTTTGTTGCTGGCGCTCAATGGGGTGCTGATCCTGGAGCCGTTG
GCCAGCTTGCAGCCGGGGTTCTGGCTGTCCTTTGCGGCGGTTGCGGTGCTGATCCTGGCGTTTGGTGGCCGGCTGGGACC
CTGGAGCCTGTGGCAGGTGTGGACTCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGCCTTGCTGGTGTTGGGGC
TGCCCATTAGCCTGAGTGCGCCGTTTGCCAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTGTTGCCGCTGGCCTTG
TTGGGCACTGCATTGCTGGCGTTGCCGTTTGTAGGGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCACTGGGTGCCTTGTT
CAACGGCTTGGCGTGGCTCGCGGGACAGATGCCGGCCTGGATTCCGGCCGATGTACCGCTGGGGTGTTGGTTGGTAAGTC
TGCTGGGCGCAGTGCTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGCTGGGTTGGCCGATGTTTCTGCTGGCGGTG
TTTCCCCCACGAGCGCTGGTGCCCGACGGACAGGTGGAGGTGACGCAGCTTGATGTCGGCCAGGGGCAATCGTTGATTTT
GCGCACCCGTCATCACACGTTGCTCTACGACGCCGGCCCGCGTTCCGGCACGTTCGACTTGGGTGCGCGCGTGGTACTGC
CGTCTTTGCGAAAGCTCGGGGTAGGAGAGCTGGATATGCTGCTGCTCAGCCACGCCGATGCCGATCACGCCGGGGGTGCA
GCGGCGATTGCCAATGGCATGCCGATCAAGCGTGTGGTGGGCGGAGAAACTGAAGGTCTGCCCCCATCGCTCGCCACCCA
GCCTTGCACCAGCGGCGAGCGCTGGATCTGGGACGGTGTGACCTTCGAACTCTGGCAGTGGCCGGACGCCATAAGTGGCA
ACGCGAAGTCCTGCGTCTTGCAGGTGCAGGCCAATGGCGAGCGCCTGCTGCTGACCGGTGATATTGGCCGTGCGGCGGAA
CAGGCCATGCTTGCGTCACCGCTGGCGGTGCCCACCGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTGGAACGGCTTGCTCCGCGATCCGTGCTGATCTCGCGAGGGCGCAACAATGCGTTCGGCCATCCCCATC
CACAGGTGATGGAACGCTACCAGCGGTTGGGCAGCCAGGTATATGACAGCGCCGAGCAGGGCGCTGTACGTCTGCAGTTG
GGTGCTTTTACGCCCCCGATAGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.278

97.166

0.586
  comA Ralstonia pseudosolanacearum GMI1000

34.293

100

0.37