Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SPL95_RS18810 Genome accession   NZ_CP139639
Coordinates   4093275..4093910 (-) Length   211 a.a.
NCBI ID   WP_016978182.1    Uniprot ID   A0A223VS35
Organism   Pseudomonas canadensis strain Pcan-CK-23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4088275..4098910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPL95_RS18775 (SPL95_18775) - 4088655..4089326 (+) 672 WP_016977342.1 Bax inhibitor-1/YccA family protein -
  SPL95_RS18780 (SPL95_18780) murB 4089389..4090408 (-) 1020 WP_028616765.1 UDP-N-acetylmuramate dehydrogenase -
  SPL95_RS18785 (SPL95_18785) - 4090405..4090869 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  SPL95_RS18790 (SPL95_18790) kdsB 4090869..4091633 (-) 765 WP_028616766.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SPL95_RS18795 (SPL95_18795) - 4091630..4091815 (-) 186 WP_003174668.1 Trm112 family protein -
  SPL95_RS18800 (SPL95_18800) lpxK 4091840..4092850 (-) 1011 WP_028616767.1 tetraacyldisaccharide 4'-kinase -
  SPL95_RS18805 (SPL95_18805) - 4092850..4093278 (-) 429 WP_010209650.1 ExbD/TolR family protein -
  SPL95_RS18810 (SPL95_18810) exbB 4093275..4093910 (-) 636 WP_016978182.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SPL95_RS18815 (SPL95_18815) comA 4093984..4096209 (-) 2226 WP_323986500.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SPL95_RS18820 (SPL95_18820) - 4096345..4096860 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  SPL95_RS18825 (SPL95_18825) - 4096857..4098227 (-) 1371 WP_122683830.1 histidine kinase sensor domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.05 Da        Isoelectric Point: 7.3615

>NTDB_id=910392 SPL95_RS18810 WP_016978182.1 4093275..4093910(-) (exbB) [Pseudomonas canadensis strain Pcan-CK-23]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=910392 SPL95_RS18810 WP_016978182.1 4093275..4093910(-) (exbB) [Pseudomonas canadensis strain Pcan-CK-23]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTTCGCGCCAGCCGCGTGACCCCCGAGCATTTGCTGGGGCAGGTCTGGTCCTGGATCAAGAACA
AACAGCTCGATAAGGAAAAACTCAAGGAGCTGCGCGCCAATTCCCCGTTGGGTGAGATCCTCGCTGCCGGGCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGCGTCATCCATGAACTGGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCTTGCTCGGTACGGTGTTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTACTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCC
GCAGGCCTGATGGTGGGTATTCCCTCGGTGTTCTTCCACCGCTTCCTGCAACGCCGCATCGATGAGCTTGTGGTGGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223VS35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848