Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SD437_RS15720 Genome accession   NZ_CP139565
Coordinates   3113759..3114403 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain NCCP     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3108759..3119403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD437_RS15685 - 3109944..3110375 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  SD437_RS15690 - 3110375..3110716 (+) 342 WP_022553706.1 Na(+)/H(+) antiporter subunit C -
  SD437_RS15695 - 3110709..3112190 (+) 1482 WP_021495363.1 Na+/H+ antiporter subunit D -
  SD437_RS15700 - 3112196..3112672 (+) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  SD437_RS15705 - 3112672..3112956 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  SD437_RS15710 mnhG 3112940..3113314 (+) 375 WP_252052749.1 monovalent cation/H(+) antiporter subunit G -
  SD437_RS15715 - 3113354..3113737 (-) 384 WP_017419422.1 hotdog fold thioesterase -
  SD437_RS15720 comA 3113759..3114403 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  SD437_RS15725 comP 3114484..3116784 (-) 2301 WP_345912442.1 histidine kinase Regulator
  SD437_RS15730 comX 3116798..3116971 (-) 174 WP_345912443.1 competence pheromone ComX -
  SD437_RS15735 - 3116940..3117800 (-) 861 WP_157774448.1 polyprenyl synthetase family protein -
  SD437_RS15740 degQ 3118008..3118148 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  SD437_RS15745 - 3118613..3118954 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=910241 SD437_RS15720 WP_003152052.1 3113759..3114403(-) (comA) [Bacillus velezensis strain NCCP]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=910241 SD437_RS15720 WP_003152052.1 3113759..3114403(-) (comA) [Bacillus velezensis strain NCCP]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCATGTGCTGAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864