Detailed information NTG0910232

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABOX98_RS07405
• Genome accession: NZ_CP158570
• Coordinates: 1557532..1558536 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SRPA1308
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1552532..1563536

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABOX98_RS07375 (ABOX98_07375)	fghA	1552624..1553475 (+)	852	WP_031685470.1	S-formylglutathione hydrolase	-
ABOX98_RS07380 (ABOX98_07380)	ispF	1553546..1554019 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABOX98_RS07385 (ABOX98_07385)	truD	1554016..1555083 (+)	1068	WP_009313546.1	tRNA pseudouridine(13) synthase TruD	-
ABOX98_RS07390 (ABOX98_07390)	surE	1555071..1555820 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ABOX98_RS07395 (ABOX98_07395)	-	1555853..1556488 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABOX98_RS07400 (ABOX98_07400)	-	1556534..1557427 (+)	894	WP_031685471.1	peptidoglycan DD-metalloendopeptidase family protein	-
ABOX98_RS07405 (ABOX98_07405)	rpoS	1557532..1558536 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ABOX98_RS07410 (ABOX98_07410)	fdxA	1558963..1559286 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ABOX98_RS07415 (ABOX98_07415)	mutS	1559353..1561932 (-)	2580	WP_077563220.1	DNA mismatch repair protein MutS	-
ABOX98_RS07420 (ABOX98_07420)	-	1561992..1562966 (-)	975	WP_023117116.1	tyrosine-type recombinase/integrase	-
ABOX98_RS07425 (ABOX98_07425)	-	1562976..1563185 (-)	210	WP_071538228.1	DUF4224 domain-containing protein	-
ABOX98_RS07430 (ABOX98_07430)	-	1563267..1563389 (-)	123	WP_003159445.1	hypothetical protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=910232 ABOX98_RS07405 WP_003113871.1 1557532..1558536(+) (rpoS) [Pseudomonas aeruginosa strain SRPA1308]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=910232 ABOX98_RS07405 WP_003113871.1 1557532..1558536(+) (rpoS) [Pseudomonas aeruginosa strain SRPA1308]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653