Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SOJ49_RS01880 Genome accession   NZ_CP139482
Coordinates   408997..409380 (+) Length   127 a.a.
NCBI ID   WP_303432905.1    Uniprot ID   -
Organism   Candidatus Thalassolituus haligoni strain BB40     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 403997..414380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOJ49_RS01850 - 404261..405268 (-) 1008 WP_369856526.1 aspartate carbamoyltransferase catalytic subunit -
  SOJ49_RS01855 pyrR 405331..405825 (-) 495 WP_369856527.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  SOJ49_RS01860 ruvX 405840..406292 (-) 453 WP_369856528.1 Holliday junction resolvase RuvX -
  SOJ49_RS01865 - 406292..406849 (-) 558 WP_369856529.1 YqgE/AlgH family protein -
  SOJ49_RS01870 - 406849..407727 (-) 879 WP_369856530.1 energy transducer TonB -
  SOJ49_RS01875 gshB 407858..408805 (-) 948 WP_369856531.1 glutathione synthase -
  SOJ49_RS01880 pilG 408997..409380 (+) 384 WP_303432905.1 twitching motility response regulator PilG Regulator
  SOJ49_RS01885 pilH 409414..409779 (+) 366 WP_369856532.1 twitching motility response regulator PilH -
  SOJ49_RS01890 - 409782..410306 (+) 525 WP_369856533.1 chemotaxis protein CheW -
  SOJ49_RS01895 - 410374..412428 (+) 2055 WP_369856534.1 methyl-accepting chemotaxis protein -
  SOJ49_RS01900 - 412453..413340 (+) 888 WP_369856535.1 protein-glutamate O-methyltransferase CheR -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14160.42 Da        Isoelectric Point: 8.4550

>NTDB_id=909950 SOJ49_RS01880 WP_303432905.1 408997..409380(+) (pilG) [Candidatus Thalassolituus haligoni strain BB40]
MDDNFQNIKVMVIDDSKTIRRTAETLLKKVGCEVITATDGFDALAKIADTSPNIIFVDIMMPRLDGYQTCALIKNNSKYK
STPVIMLSSKDGLFDKAKGRIVGSDEYLTKPFSKDELLGSIRQYVKS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=909950 SOJ49_RS01880 WP_303432905.1 408997..409380(+) (pilG) [Candidatus Thalassolituus haligoni strain BB40]
ATGGACGACAACTTTCAAAATATCAAAGTGATGGTCATCGACGATAGCAAGACCATTCGTCGCACAGCAGAGACGCTGCT
GAAAAAAGTAGGCTGCGAGGTGATTACGGCAACCGATGGCTTTGATGCCCTCGCCAAAATCGCAGACACCAGCCCGAATA
TTATTTTTGTCGATATTATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTGATAAAAAACAATTCCAAGTACAAG
TCCACGCCAGTGATCATGCTTTCAAGTAAAGACGGTCTTTTCGATAAGGCAAAGGGCCGCATTGTAGGTTCTGACGAATA
TCTCACCAAGCCGTTCAGTAAGGACGAGCTGCTGGGTTCTATCCGGCAATACGTAAAATCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

78.74

100

0.787
  pilH Synechocystis sp. PCC 6803

41.525

92.913

0.386
  vicR Streptococcus mutans UA159

40.678

92.913

0.378