Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R6Z04_RS17230 Genome accession   NZ_CP139440
Coordinates   3252475..3253119 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain GUCC4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3247475..3258119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Z04_RS17195 (R6Z04_17195) mrpB 3248667..3249098 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  R6Z04_RS17200 (R6Z04_17200) mrpC 3249098..3249439 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  R6Z04_RS17205 (R6Z04_17205) mrpD 3249432..3250913 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  R6Z04_RS17210 (R6Z04_17210) mrpE 3250919..3251395 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  R6Z04_RS17215 (R6Z04_17215) mrpF 3251395..3251679 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  R6Z04_RS17220 (R6Z04_17220) mnhG 3251663..3252037 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  R6Z04_RS17225 (R6Z04_17225) yuxO 3252076..3252456 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  R6Z04_RS17230 (R6Z04_17230) comA 3252475..3253119 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  R6Z04_RS17235 (R6Z04_17235) comP 3253200..3255508 (-) 2309 Protein_3333 two-component system sensor histidine kinase ComP -
  R6Z04_RS17240 (R6Z04_17240) comX 3255523..3255690 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  R6Z04_RS17245 (R6Z04_17245) comQ 3255678..3256577 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  R6Z04_RS17250 (R6Z04_17250) degQ 3256762..3256902 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  R6Z04_RS17255 (R6Z04_17255) - 3257124..3257249 (+) 126 WP_003228793.1 hypothetical protein -
  R6Z04_RS17260 (R6Z04_17260) - 3257363..3257731 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=909810 R6Z04_RS17230 WP_003220716.1 3252475..3253119(-) (comA) [Bacillus subtilis strain GUCC4]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=909810 R6Z04_RS17230 WP_003220716.1 3252475..3253119(-) (comA) [Bacillus subtilis strain GUCC4]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1