Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SM123_RS09640 Genome accession   NZ_CP139419
Coordinates   1995373..1997349 (-) Length   658 a.a.
NCBI ID   WP_320909512.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1990373..2002349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS09620 (SM123_09620) - 1990577..1991365 (+) 789 WP_214259377.1 energy-coupling factor transporter transmembrane component T -
  SM123_RS09625 (SM123_09625) - 1991379..1992104 (+) 726 WP_049473104.1 energy-coupling factor ABC transporter ATP-binding protein -
  SM123_RS09630 (SM123_09630) - 1992160..1992573 (-) 414 WP_320909510.1 YjdF family protein -
  SM123_RS09635 (SM123_09635) leuS 1992748..1995249 (-) 2502 WP_320909511.1 leucine--tRNA ligase -
  SM123_RS09640 (SM123_09640) amiA3 1995373..1997349 (-) 1977 WP_320909512.1 peptide ABC transporter substrate-binding protein Regulator
  SM123_RS09645 (SM123_09645) - 1997515..1998837 (+) 1323 WP_320909513.1 DUF1958 domain-containing protein -
  SM123_RS09650 (SM123_09650) - 1998896..1999987 (-) 1092 WP_320909514.1 glycerol dehydrogenase -
  SM123_RS09655 (SM123_09655) - 2000002..2000670 (-) 669 WP_049486453.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72791.83 Da        Isoelectric Point: 5.6527

>NTDB_id=909561 SM123_RS09640 WP_320909512.1 1995373..1997349(-) (amiA3) [Streptococcus lingualis strain S5]
MNKGKVLLATSALLLSAGVLAACSGGKSSSSGGQTFSYVYTQDPDTLDYSISNKKSTSEFTGNAIDGLLEVDKYGNLIPS
LAKDWTVSKDGLTYTYKLRKGVKWMTSEGEEYGEVKAQDFVTGLKHAADKKSQAIYLVQKSVKGLDDYVSGKTTDFSTVG
VKAIDDYTVQYTLSQPESFWNSKTTMGILMPVNGEFLKSKGDNYGQGTSPSSILYCGPYLIKSITSKSSAILEKNPTYWD
ADNVKISKVKLTYYDGQDSESLIRGFDNGDYTVARVFPNGSNYKSVEKKHKDDIVFTDQGSSTYNLSFNIDRQAYEITKK
TTDAQKTSTKKAILNKDFRQAIMFAFNRKAYVAQTNGEAGANKVIRNTFTPPNFVQIDGKQFGDAVEKDLEAYGDEWKGV
SVADGKDTLYNPNKAKEEFAKAKADLQSQGVEFPIHLDLPTSSTYTEGIKQAQSFKQSVESTLGAENIVIDLNIISEDDL
QRVTYFAESASQQDWDLNNNLGWSPDYTDPSSYIDITSGKSGENANSYFGFDAGTDNAAAKAAGFDKYDQLIEDAHNETK
DVNKRYEKYAAAQAWLTDSALLIPIHSDGASPVVRKTVPYSAAFAWTGHKGQSFNYKYLEVQDKVVSAKDYDKARDQWKK
EKEKSNKKAQEELEKHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=909561 SM123_RS09640 WP_320909512.1 1995373..1997349(-) (amiA3) [Streptococcus lingualis strain S5]
ATGAACAAAGGGAAGGTACTCTTAGCTACCAGCGCTCTGCTTTTATCAGCTGGTGTACTGGCAGCCTGCTCAGGAGGGAA
ATCTAGTAGCTCTGGTGGTCAGACATTTAGCTATGTCTATACCCAGGATCCGGATACCTTAGACTACTCGATTTCCAATA
AAAAATCGACTTCTGAGTTTACAGGAAATGCGATAGATGGCTTGTTGGAAGTGGACAAGTACGGGAACTTGATCCCATCG
CTTGCTAAAGACTGGACGGTTTCCAAGGATGGCTTGACCTATACTTATAAACTCCGTAAAGGGGTCAAATGGATGACTTC
TGAAGGGGAAGAATATGGAGAAGTCAAGGCCCAAGACTTTGTCACAGGTCTCAAGCACGCAGCAGACAAGAAATCACAAG
CAATTTACTTGGTCCAAAAATCTGTCAAAGGCTTGGATGATTATGTTTCAGGGAAGACAACTGATTTTTCAACAGTTGGT
GTAAAAGCTATTGACGATTACACCGTTCAATATACCCTGAGCCAACCAGAAAGTTTCTGGAATTCTAAGACTACGATGGG
GATCTTGATGCCGGTTAATGGAGAATTCCTGAAATCTAAGGGAGATAACTATGGTCAAGGGACCTCTCCGTCTAGTATCC
TATACTGCGGTCCTTATTTGATCAAATCCATCACTTCTAAATCTTCTGCGATATTGGAAAAGAACCCAACATACTGGGAT
GCGGATAATGTTAAGATCAGTAAAGTGAAGCTGACCTATTATGATGGACAAGACTCCGAGTCTCTGATCCGTGGATTTGA
TAACGGCGACTATACAGTTGCTCGTGTCTTCCCAAATGGCTCTAACTATAAGAGTGTAGAGAAGAAGCACAAAGACGATA
TCGTCTTTACTGACCAAGGTTCCTCAACCTATAACCTTTCCTTCAACATTGACCGTCAGGCTTATGAAATCACAAAGAAG
ACCACGGATGCTCAAAAGACTTCAACTAAGAAAGCAATCTTAAATAAGGACTTCCGTCAAGCCATTATGTTTGCCTTTAA
CCGCAAGGCTTATGTAGCGCAAACTAACGGGGAAGCGGGTGCCAATAAGGTGATCCGTAATACCTTTACGCCACCAAACT
TTGTCCAAATCGATGGCAAACAATTTGGTGATGCAGTAGAAAAAGACTTGGAAGCTTATGGGGATGAATGGAAAGGGGTC
TCTGTCGCAGATGGAAAAGACACCCTCTACAATCCAAACAAGGCCAAAGAAGAGTTTGCCAAAGCCAAGGCAGACTTGCA
GTCTCAAGGAGTTGAATTCCCAATTCATTTGGACCTTCCAACTTCTTCTACTTATACGGAAGGAATTAAACAGGCCCAAT
CCTTTAAACAGTCGGTTGAATCTACACTGGGAGCAGAAAATATTGTAATTGATTTGAATATAATTTCTGAGGATGATCTG
CAACGGGTTACCTACTTTGCTGAAAGTGCTTCGCAACAAGACTGGGATTTGAACAATAACTTGGGTTGGAGTCCAGACTA
TACGGACCCATCTTCTTACATCGACATCACTAGTGGTAAATCCGGCGAAAACGCCAATTCTTACTTTGGATTCGATGCTG
GTACGGATAATGCAGCCGCAAAAGCAGCTGGTTTTGATAAATACGATCAATTGATCGAAGATGCGCACAATGAAACCAAA
GATGTGAACAAGCGTTACGAAAAATATGCTGCCGCTCAAGCTTGGTTGACCGATAGTGCCCTCTTGATTCCGATCCATTC
AGATGGAGCTTCTCCAGTCGTTCGTAAGACTGTACCATACTCTGCAGCCTTTGCTTGGACAGGCCACAAGGGTCAATCCT
TCAACTATAAATATTTAGAAGTTCAAGACAAGGTCGTATCGGCTAAAGACTACGACAAAGCGCGTGATCAATGGAAGAAA
GAAAAAGAAAAATCCAATAAAAAAGCGCAAGAAGAACTTGAAAAGCATGTGAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

55.606

100

0.558
  amiA3 Streptococcus thermophilus LMG 18311

55.303

100

0.555
  amiA Streptococcus salivarius strain HSISS4

55.083

100

0.552