Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SM123_RS07540 Genome accession   NZ_CP139419
Coordinates   1572930..1574894 (+) Length   654 a.a.
NCBI ID   WP_320909358.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567930..1579894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS07510 (SM123_07510) - 1568012..1568710 (-) 699 WP_049474267.1 3-oxoacyl-ACP reductase -
  SM123_RS07515 (SM123_07515) - 1568703..1568939 (-) 237 WP_000141913.1 DUF2829 domain-containing protein -
  SM123_RS07520 (SM123_07520) - 1569044..1570435 (-) 1392 WP_320909356.1 amino acid permease -
  SM123_RS07525 (SM123_07525) - 1570720..1571550 (-) 831 WP_320909357.1 hypothetical protein -
  SM123_RS07530 (SM123_07530) - 1571547..1572347 (-) 801 WP_070589537.1 hypothetical protein -
  SM123_RS07535 (SM123_07535) - 1572341..1572670 (-) 330 WP_003012258.1 PadR family transcriptional regulator -
  SM123_RS07540 (SM123_07540) amiA 1572930..1574894 (+) 1965 WP_320909358.1 peptide ABC transporter substrate-binding protein Regulator
  SM123_RS07545 (SM123_07545) - 1575374..1577377 (-) 2004 WP_320909359.1 FtsX-like permease family protein -
  SM123_RS07550 (SM123_07550) - 1577370..1578137 (-) 768 WP_320909360.1 ABC transporter ATP-binding protein -
  SM123_RS07555 (SM123_07555) - 1578463..1579017 (-) 555 WP_320909361.1 hypothetical protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72494.48 Da        Isoelectric Point: 5.0271

>NTDB_id=909545 SM123_RS07540 WP_320909358.1 1572930..1574894(+) (amiA) [Streptococcus lingualis strain S5]
MKKSKLALLAGVAAASTLFLAACGSSSNASKGTTYNYVYGTDPDSLNYLTSNRSTTSDITTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAQDFVTSLKYVADKKSDALYLVQNSVKSLDDYVNGKTKDFSTVGV
KAVDDHTLQYTLNQPESFWNSKLTTATMMPVNEKFLESAGKDFGSVKPNGILYNGPYILKSFTSKSQIELDKNPDYYDKK
NVHIDTVKLTYFDGSDQDYLARNFSDGNLSTARLFPTSSTYSTIEKKFKDNIVYTPQDSTVYYAYFNVNRQNYGHTKKTS
DEQKNSTKTALQNKNFRQALNFALDRTSYSAQVNGKDGASKTLRTLLVPPTFVQANGKDFGTLVEEKLAATGDEWKGVSF
ADAQDSLHNADKAKAELEKAKSELQSQGVQFPIHIDYVVDQSSNALVQQADSMKSSIETALGKDNVVIDVQKLSTDDADN
ATYFAQSPDQKDFDMDITGWGPDFQDPSTYLDILNPTDGSTLTGMGLDPKKDQALIEKIGLNQYKELLDAANAEKLDTNA
RYEKYAAAQAWLTENAMVLPIYSKGGVPSITKVTPFSAANSAIGIKGESSFFKYQKVQDKTVTTADYEKAYKNWLKEKEE
SNKKAQEELAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=909545 SM123_RS07540 WP_320909358.1 1572930..1574894(+) (amiA) [Streptococcus lingualis strain S5]
ATGAAAAAATCGAAGCTTGCTCTTTTAGCAGGTGTCGCCGCGGCTTCAACGCTTTTCCTTGCTGCATGTGGCTCATCTTC
TAATGCGTCAAAAGGGACTACTTACAACTACGTGTATGGTACAGACCCTGATTCCTTGAACTATTTGACTTCAAATCGTT
CAACTACAAGCGACATTACAACCAACTTGGTCGATGGTTTGTTTGAAAACGATCAATACGGTAACTTAGTGCCTGCTCTT
GCTGAGGACTGGTCCGTTTCAAAAGACGGTCTGACTTATACTTACAAGCTTCGAAAAGATGCGAAGTGGTATGATTCAGA
AGGAAATGAATACGCTGACGTCACTGCACAAGATTTCGTGACATCTCTAAAATACGTAGCAGATAAAAAATCGGATGCTC
TTTACTTGGTTCAAAACTCGGTCAAAAGCTTGGATGACTATGTAAACGGGAAAACCAAAGACTTCTCAACTGTTGGGGTA
AAAGCTGTTGATGATCACACTCTTCAATACACTTTGAACCAACCAGAATCTTTCTGGAATTCTAAATTGACGACTGCTAC
CATGATGCCAGTTAATGAAAAATTCTTGGAATCAGCTGGGAAAGACTTTGGTAGCGTGAAACCAAATGGTATCCTCTACA
ATGGTCCATACATTTTGAAATCCTTCACTTCAAAATCACAAATCGAGTTGGATAAAAACCCTGATTACTACGACAAGAAA
AATGTTCACATCGATACGGTTAAATTGACTTACTTCGATGGATCTGACCAAGACTATCTTGCTCGTAACTTCTCAGATGG
GAACCTATCTACTGCTCGTCTCTTCCCAACAAGCTCAACTTACAGCACAATTGAGAAGAAATTCAAGGATAACATCGTTT
ATACACCTCAAGATTCTACTGTTTACTACGCTTACTTCAACGTTAACCGTCAAAACTACGGTCATACGAAGAAGACGTCT
GATGAGCAAAAGAACAGTACTAAGACAGCTCTTCAAAACAAGAATTTCCGTCAAGCCTTGAACTTTGCTTTAGACAGAAC
TTCCTACAGCGCTCAAGTTAACGGGAAAGACGGAGCATCAAAAACTCTACGTACCCTTCTAGTTCCACCAACATTTGTGC
AAGCCAACGGAAAAGACTTCGGTACGCTCGTTGAAGAAAAACTTGCCGCAACAGGAGATGAGTGGAAAGGTGTTAGCTTT
GCTGACGCGCAAGATAGCTTGCATAATGCGGATAAAGCCAAAGCGGAACTTGAAAAAGCGAAATCTGAATTGCAATCACA
AGGTGTTCAATTCCCAATCCATATCGACTATGTCGTAGACCAATCTTCTAATGCTCTTGTCCAACAAGCAGACTCTATGA
AGAGTTCTATTGAAACAGCTCTTGGTAAAGACAATGTCGTGATCGATGTACAAAAATTGTCTACAGACGATGCAGACAAC
GCTACTTACTTCGCCCAATCACCAGATCAAAAAGACTTTGATATGGATATCACAGGTTGGGGACCTGACTTCCAAGATCC
ATCTACTTACTTGGATATCTTGAACCCAACAGATGGTTCAACCTTGACTGGTATGGGACTTGATCCTAAGAAAGACCAAG
CTCTCATCGAAAAAATTGGTTTGAACCAATACAAAGAATTGTTGGATGCTGCTAATGCTGAAAAATTGGATACCAATGCG
CGTTATGAAAAATACGCTGCTGCCCAAGCTTGGTTGACTGAAAACGCAATGGTACTTCCAATCTACTCTAAGGGTGGAGT
TCCATCTATCACGAAGGTAACGCCATTCTCAGCAGCAAATTCTGCAATTGGTATTAAAGGTGAATCAAGCTTCTTCAAAT
ACCAAAAAGTTCAAGATAAGACAGTTACAACTGCTGATTACGAAAAAGCTTATAAGAATTGGTTGAAAGAAAAAGAAGAA
TCAAACAAAAAAGCGCAAGAAGAACTTGCAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.687

100

0.57
  amiA3 Streptococcus thermophilus LMG 18311

55.387

100

0.558
  amiA3 Streptococcus thermophilus LMD-9

55.387

100

0.558