Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SM123_RS07455 Genome accession   NZ_CP139419
Coordinates   1558058..1560025 (-) Length   655 a.a.
NCBI ID   WP_320909351.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553058..1565025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS07425 (SM123_07425) - 1554444..1555076 (-) 633 WP_049515494.1 DUF421 domain-containing protein -
  SM123_RS07430 (SM123_07430) - 1555073..1555525 (-) 453 WP_320909350.1 DUF3290 family protein -
  SM123_RS07435 (SM123_07435) - 1555661..1556488 (+) 828 WP_049522944.1 exodeoxyribonuclease III -
  SM123_RS07440 (SM123_07440) - 1556500..1556886 (+) 387 WP_004219638.1 VOC family protein -
  SM123_RS07445 (SM123_07445) - 1557121..1557759 (-) 639 WP_023917595.1 hypothetical protein -
  SM123_RS07450 (SM123_07450) - 1557867..1557959 (+) 93 Protein_1449 VOC family protein -
  SM123_RS07455 (SM123_07455) amiA3 1558058..1560025 (-) 1968 WP_320909351.1 peptide ABC transporter substrate-binding protein Regulator
  SM123_RS07460 (SM123_07460) nth 1560293..1560916 (-) 624 WP_003006251.1 endonuclease III -
  SM123_RS07465 (SM123_07465) - 1561021..1561329 (-) 309 WP_070594428.1 hypothetical protein -
  SM123_RS07470 (SM123_07470) - 1561352..1562044 (-) 693 WP_021152843.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  SM123_RS07475 (SM123_07475) macP 1562069..1562404 (-) 336 WP_070589511.1 cell wall synthase accessory phosphoprotein MacP -
  SM123_RS07480 (SM123_07480) - 1562416..1562961 (-) 546 WP_223325331.1 NUDIX hydrolase -
  SM123_RS07485 (SM123_07485) glmU 1562971..1564350 (-) 1380 WP_320909352.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72127.37 Da        Isoelectric Point: 5.4796

>NTDB_id=909544 SM123_RS07455 WP_320909351.1 1558058..1560025(-) (amiA3) [Streptococcus lingualis strain S5]
MKAKKLLALAGVSVAGAFLLAACGGGSSNQATYSFVYSADPNTLDYIAATRTTTSDVTSNLVDGLLENDRYGNFVPSLAE
DWTVSEDGLTYTYKLRKDAKWYTSEGEEYGAVTAQDFVTGIKHAVESKSEGLFLIQNSIKGLDAYVKGETKDFNTVGVKA
LDDHTIQYTLVRPESFWNSKTTSGVLFPVNADFLKSQGKDFGSLKPSSILYNGPYYLKSLTSKSEIELVKNKDYYDAKNV
HIDNVKLTFNDGSNPDSIIKNFEKGQYSFASVMPNSSTYKSVKKNFGDNIVYGLQLGTSYYLGFNLDRQKYDHTAKTTDE
QKASTKKAILNKDFRQAVNFGFDRKSYAAQVSGADAAENTLRSTLVPPTYVQVNGEDFGKVVEKQLVTYGDQWKGVSLDD
GQTSLYSPEKAKASFAKAKAELQKQGVQFPIHLDYIVSQVDNSMVQQASSFKQSVESALGADNVVVDLQKVSDDDFQNIT
YFSDTAAARDYDISGGGWAPDYQDPSTYLESISPVNGSVFYYLGIDAGSNNPAIATVGLDQYANMLKDADAELLDQAKRY
EKYAAAQAWLTDSSITLPTVSNGGAPMLQRTVPYSRAASWVGTKGTGTFYKYLEMSKDVVTTKDFNKAKEEWLKKKAESN
KKAQEDLKDHIEKKK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=909544 SM123_RS07455 WP_320909351.1 1558058..1560025(-) (amiA3) [Streptococcus lingualis strain S5]
ATGAAAGCAAAAAAACTGTTAGCTCTTGCAGGAGTTTCTGTTGCAGGTGCCTTTCTTTTAGCAGCATGTGGCGGTGGTAG
TAGCAATCAAGCAACCTACTCATTCGTCTATTCAGCAGATCCAAATACCTTGGATTACATCGCTGCAACTCGTACAACAA
CTTCAGATGTCACAAGTAACCTTGTAGATGGTCTTCTTGAAAACGACCGATACGGAAACTTTGTGCCAAGTCTAGCAGAA
GATTGGACTGTCTCTGAAGATGGATTAACCTATACTTACAAACTTCGTAAGGATGCCAAATGGTATACGAGTGAAGGAGA
AGAATATGGTGCTGTAACGGCTCAAGACTTTGTTACAGGGATCAAACACGCGGTTGAGTCTAAATCAGAAGGTCTCTTCT
TGATTCAAAATTCGATCAAAGGTTTGGATGCCTACGTAAAAGGGGAAACCAAAGACTTTAACACAGTTGGAGTGAAAGCC
TTAGATGACCACACCATCCAATATACCTTGGTCCGTCCAGAAAGCTTCTGGAACTCAAAAACAACCTCAGGTGTTCTTTT
CCCAGTCAATGCGGATTTCTTGAAATCTCAAGGAAAAGATTTTGGTTCTTTGAAACCTAGCAGCATCTTATACAATGGTC
CATATTACCTGAAATCATTGACTTCAAAATCTGAGATTGAATTGGTCAAGAACAAAGACTATTACGATGCGAAAAATGTT
CATATCGACAATGTCAAATTGACCTTTAATGATGGATCAAACCCAGATTCTATCATTAAGAACTTTGAAAAAGGTCAATA
TTCCTTTGCATCTGTTATGCCAAACAGCTCGACTTATAAGAGCGTCAAGAAAAACTTTGGCGACAACATTGTCTACGGTT
TGCAATTGGGAACATCCTACTACCTTGGATTCAACTTGGACCGTCAAAAATATGACCACACAGCCAAAACAACGGATGAA
CAAAAAGCCTCTACCAAGAAAGCAATCTTGAACAAGGACTTCCGTCAAGCGGTGAACTTTGGTTTTGACCGCAAATCTTA
TGCGGCACAAGTTTCAGGGGCTGATGCGGCTGAAAATACCCTTCGTAGTACCTTGGTGCCACCAACTTATGTCCAAGTCA
ATGGAGAAGACTTTGGTAAAGTCGTTGAAAAACAATTGGTTACCTATGGGGATCAATGGAAAGGTGTGAGCCTGGACGAT
GGTCAAACAAGCCTTTACAGCCCAGAAAAAGCCAAGGCTTCATTTGCGAAAGCTAAAGCTGAATTGCAAAAACAAGGAGT
TCAATTCCCAATTCATTTGGACTACATTGTTAGCCAAGTGGACAACAGCATGGTCCAACAAGCTAGCTCCTTCAAACAAT
CTGTAGAGTCAGCGCTTGGTGCAGACAATGTCGTTGTGGACCTTCAAAAGGTATCGGATGATGATTTCCAAAATATCACC
TACTTCAGCGATACAGCGGCTGCGAGAGATTACGATATCTCAGGCGGTGGTTGGGCTCCTGACTACCAAGACCCATCGAC
TTACCTCGAAAGTATCAGCCCAGTAAATGGTTCTGTCTTCTACTATCTTGGTATTGATGCAGGTTCAAACAACCCAGCCA
TTGCAACAGTTGGTTTGGATCAATACGCTAACATGTTGAAAGACGCAGATGCTGAATTGTTGGATCAAGCAAAACGCTAT
GAAAAATATGCAGCAGCGCAAGCATGGTTGACAGATAGCTCGATTACGCTTCCAACTGTTTCAAATGGTGGTGCTCCAAT
GCTTCAACGGACCGTACCATACAGCCGTGCGGCTTCATGGGTTGGTACAAAAGGAACAGGAACATTCTACAAATACCTTG
AAATGTCTAAAGATGTTGTCACTACAAAAGACTTTAACAAGGCCAAAGAAGAATGGTTGAAGAAAAAAGCAGAATCCAAT
AAAAAAGCTCAAGAAGATCTCAAAGATCACATTGAGAAGAAAAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.485

100

0.539
  amiA3 Streptococcus thermophilus LMG 18311

53.333

100

0.537
  amiA Streptococcus salivarius strain HSISS4

52.352

100

0.527