Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SM123_RS04675 Genome accession   NZ_CP139419
Coordinates   998302..1000287 (+) Length   661 a.a.
NCBI ID   WP_320909963.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 993302..1005287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS04640 (SM123_04640) - 993662..994045 (+) 384 WP_320909958.1 barstar family protein -
  SM123_RS04645 (SM123_04645) - 994316..994570 (+) 255 WP_320909959.1 hypothetical protein -
  SM123_RS04650 (SM123_04650) - 994700..995122 (+) 423 WP_320909960.1 hypothetical protein -
  SM123_RS04655 (SM123_04655) - 995135..995518 (+) 384 WP_320909961.1 hypothetical protein -
  SM123_RS04660 (SM123_04660) - 995935..996405 (+) 471 WP_320909962.1 hypothetical protein -
  SM123_RS04665 (SM123_04665) - 996422..996799 (+) 378 WP_287312416.1 hypothetical protein -
  SM123_RS04670 (SM123_04670) - 996886..997923 (+) 1038 WP_070506252.1 M42 family metallopeptidase -
  SM123_RS04675 (SM123_04675) amiA 998302..1000287 (+) 1986 WP_320909963.1 peptide ABC transporter substrate-binding protein Regulator
  SM123_RS04680 (SM123_04680) - 1000407..1003436 (+) 3030 WP_320909964.1 CocE/NonD family hydrolase -
  SM123_RS04685 (SM123_04685) trxA 1003534..1003848 (+) 315 WP_003002728.1 thioredoxin -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73599.29 Da        Isoelectric Point: 5.4218

>NTDB_id=909532 SM123_RS04675 WP_320909963.1 998302..1000287(+) (amiA) [Streptococcus lingualis strain S5]
MKKRNVIALAGVALLSAGILVACSGGSKSSSSSNGQKFSYVYETEPENLNYITSGKAATHDITGNLIDGLFENDKYGNLI
PSLAKDWTVSQDGLTYTYKLRDDAKWYDSEGEEYADVTAKDFVTGIKYAADNKSEMLYIIQDSIKGLNDYVSGKNKDFSA
VGVKAVDDHTLQITLNQPESYWNSKLTLGITFPVNEKFVKSKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMTKNENY
WDKDKVYISDVKLEFYDGQDQSKLAKSFGENALSLAKLFPTGSGYSEQAKEFKDEITYTPQDAASYVIGTNIDRQSYKHT
AKKTDEEKQSTKKALLNKDFRQAISFAFNREAYAAQLNGKDGASKIIRNLYIPPTFVQANGKTFGEMVKTQLDTYGDEWK
STKLDDGQNGLFDAKKAKEEFAKAKTALEAEGVKFPIHIDMPVDQTTPSRVQRVQSFKQSVEEALGKENIVIDIQMLSKE
DLQNVTLFAPNAAGEDWDLSDNVGWSPDYQDPSTYMDILKASSGENTKTFLGFDPSENNEAAKKVGLYDFEKMIKDAGAE
TQDVNKRYEKYAAAQAWLTDSALVMPTSSSTGRPFLTRIEPFSAPFAWTGGKGKDHVIYKGMKLQDKAVTTADYNKALEK
WQKEQAESNKKAQEDLKKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=909532 SM123_RS04675 WP_320909963.1 998302..1000287(+) (amiA) [Streptococcus lingualis strain S5]
ATGAAAAAAAGAAATGTCATTGCACTTGCGGGAGTTGCCCTCCTTTCAGCAGGTATCCTAGTAGCTTGTTCGGGTGGTTC
TAAATCATCTAGCTCAAGCAACGGTCAAAAATTCTCATATGTCTATGAGACTGAGCCAGAAAACCTAAACTATATCACAT
CTGGTAAAGCAGCAACCCACGATATCACAGGAAACTTGATTGATGGCTTGTTTGAAAATGACAAATACGGTAACTTGATT
CCATCTCTTGCAAAAGATTGGACAGTTTCGCAAGATGGCTTGACTTATACTTATAAACTTCGTGATGATGCTAAATGGTA
TGATTCAGAAGGCGAAGAGTATGCGGATGTCACTGCTAAAGATTTCGTCACAGGGATCAAATATGCGGCTGATAACAAAT
CAGAAATGCTCTACATCATCCAAGATTCTATCAAAGGCTTGAATGACTACGTCAGCGGTAAAAATAAAGATTTCTCAGCT
GTAGGAGTAAAAGCAGTTGATGATCATACCCTTCAAATCACTTTGAACCAACCAGAATCTTACTGGAACTCTAAATTGAC
TCTTGGGATTACTTTCCCAGTCAACGAAAAATTCGTGAAATCAAAAGGGGATAAATTCGCTCAAGCAAGTGACACCAGCT
CCCTTCTTTACAATGGTCCTTACATCTTGAAGAGCTTTACTTCAAAATCTTCTATCGAAATGACCAAGAATGAAAACTAC
TGGGATAAAGACAAGGTCTACATCTCAGATGTGAAATTGGAATTCTACGATGGACAAGACCAAAGTAAATTGGCTAAATC
ATTCGGTGAAAATGCTCTTAGCTTGGCCAAACTCTTCCCAACTGGATCTGGTTACTCAGAGCAAGCCAAAGAATTTAAAG
ACGAAATCACCTACACTCCTCAAGACGCTGCTTCTTATGTCATTGGTACCAACATCGACCGTCAATCTTACAAACACACT
GCTAAGAAGACCGATGAAGAAAAACAATCTACTAAGAAAGCTCTCTTGAACAAGGACTTCCGTCAAGCGATCAGCTTTGC
CTTCAACCGTGAAGCGTATGCTGCTCAATTGAACGGAAAAGACGGAGCAAGTAAGATCATCCGTAACCTCTACATTCCAC
CAACATTTGTCCAAGCTAATGGCAAGACCTTTGGTGAAATGGTGAAAACTCAATTGGATACCTACGGAGATGAGTGGAAA
TCTACTAAACTAGACGATGGTCAAAACGGTCTCTTCGATGCGAAGAAAGCGAAGGAAGAGTTTGCAAAAGCGAAGACTGC
CTTGGAAGCAGAAGGTGTGAAATTCCCAATTCACATCGATATGCCTGTAGACCAAACCACACCATCAAGAGTTCAACGGG
TACAATCCTTCAAACAATCTGTTGAAGAAGCACTTGGTAAAGAAAATATCGTCATCGATATCCAAATGCTTTCGAAAGAA
GACCTTCAAAATGTGACCCTCTTTGCGCCAAATGCGGCCGGCGAAGACTGGGATCTCTCTGATAATGTTGGATGGAGCCC
TGACTACCAAGACCCATCAACTTACATGGATATCTTGAAAGCTTCATCTGGTGAAAATACTAAGACTTTCCTTGGATTTG
ACCCAAGTGAAAACAATGAAGCAGCTAAAAAAGTTGGTCTGTACGACTTTGAAAAGATGATCAAAGATGCTGGTGCAGAA
ACACAAGACGTCAACAAACGCTATGAAAAATATGCGGCAGCACAAGCTTGGTTGACAGATAGCGCCCTTGTTATGCCAAC
TTCTTCATCAACTGGACGTCCATTCTTGACACGTATCGAACCATTCTCAGCTCCATTTGCATGGACTGGTGGTAAAGGAA
AAGACCACGTGATCTACAAAGGAATGAAACTCCAAGATAAAGCTGTGACAACTGCTGACTACAACAAAGCCCTTGAAAAA
TGGCAAAAAGAACAAGCAGAGTCAAACAAAAAAGCACAAGAAGATCTTAAGAAACACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.949

100

0.57
  amiA3 Streptococcus thermophilus LMD-9

56.798

100

0.569
  amiA3 Streptococcus thermophilus LMG 18311

56.344

100

0.564