Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SM121_RS08630 Genome accession   NZ_CP139418
Coordinates   1765756..1767720 (+) Length   654 a.a.
NCBI ID   WP_129824367.1    Uniprot ID   A0A4V1Y8L8
Organism   Streptococcus dentalis strain S1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1760756..1772720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS08600 (SM121_08600) - 1760888..1761586 (-) 699 WP_155125568.1 3-oxoacyl-ACP reductase -
  SM121_RS08605 (SM121_08605) - 1761579..1761815 (-) 237 WP_050242411.1 DUF2829 domain-containing protein -
  SM121_RS08610 (SM121_08610) - 1761920..1763311 (-) 1392 WP_155125566.1 APC family permease -
  SM121_RS08615 (SM121_08615) - 1763546..1764376 (-) 831 WP_155171481.1 hypothetical protein -
  SM121_RS08620 (SM121_08620) - 1764373..1765173 (-) 801 WP_155171479.1 hypothetical protein -
  SM121_RS08625 (SM121_08625) - 1765167..1765496 (-) 330 WP_003012258.1 PadR family transcriptional regulator -
  SM121_RS08630 (SM121_08630) amiA 1765756..1767720 (+) 1965 WP_129824367.1 peptide ABC transporter substrate-binding protein Regulator
  SM121_RS08635 (SM121_08635) - 1768077..1770080 (-) 2004 Protein_1666 FtsX-like permease family protein -
  SM121_RS08640 (SM121_08640) - 1770073..1770840 (-) 768 WP_129824369.1 ABC transporter ATP-binding protein -
  SM121_RS08645 (SM121_08645) - 1771026..1771643 (-) 618 WP_155125560.1 DUF1307 domain-containing protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72375.38 Da        Isoelectric Point: 5.0885

>NTDB_id=909505 SM121_RS08630 WP_129824367.1 1765756..1767720(+) (amiA) [Streptococcus dentalis strain S1]
MKKSKLALLAGVAAASTLFLAACGSSSNASKGTTYNYVYSSDPDTLNYLTSNRATTSDITTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAQDFVTSLKYVADKKSDALYLVQNSVKGLDDYVNGKTKDFSTVGV
KAVDDHTLQYTLNQPESFWNSKLTTATMMPVNEKFLESAGKDFGSVKPSGILYNGPYILKSFTSKSQIELDKNPEYYDKK
NVHIDTVKLTYFDGSDQDYLARNFSDGNLSTARLFPTSSTYTTIQKKFKDNIVYSPQDAVAYYAYFNVNRQNYGHTKKTS
DEQKNSTKTALQNKNFRQALNFALDRTSYSAQANGKDGATKTLRTLLVPPTFVQANGKDFGTLVEEKLAATGDEWKGVSF
ADAQDSLHNADKAKAELAKAKSELQSQGVQFPIHIDYVVDQSSSSLVQQADSMKSSIESALGKDNVVIDVQKLSTDDADN
ATYFAQSPDQKDFDMDITGWGPDFQDPSTYLDILNPTDGSTLTGMGLDPKKDQALIEKIGLNQYKELLDAANAEKLDTNA
RYEKYADAQAWLTENAIVLPIYSKGGVPSITKVTPFSAANSAIGIKGETSFFKYQKLQDKTVTTADYEKAYKNWLKEKEE
SNKKAQEELAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=909505 SM121_RS08630 WP_129824367.1 1765756..1767720(+) (amiA) [Streptococcus dentalis strain S1]
ATGAAAAAATCGAAGCTTGCTCTTTTAGCAGGTGTCGCCGCAGCTTCAACGCTTTTCCTTGCTGCATGTGGCTCATCTTC
TAATGCGTCAAAAGGGACAACCTACAACTACGTGTATAGTTCTGACCCTGATACCTTGAACTATTTGACTTCAAACCGTG
CAACTACAAGCGATATTACTACCAACTTGGTCGATGGTTTGTTTGAAAACGACCAATACGGTAACTTAGTGCCTGCTCTT
GCTGAAGACTGGTCCGTTTCAAAAGACGGTCTGACTTATACTTACAAGCTTCGAAAAGACGCGAAGTGGTATGATTCAGA
AGGAAATGAATATGCTGACGTCACTGCACAAGATTTCGTGACATCTCTAAAATACGTAGCAGATAAAAAATCTGATGCAC
TTTACTTGGTTCAAAACTCAGTCAAAGGATTAGATGATTATGTAAACGGGAAAACCAAAGACTTCTCAACTGTTGGGGTA
AAAGCTGTTGATGATCACACTCTTCAATATACTTTGAACCAACCAGAATCTTTCTGGAATTCTAAATTGACGACTGCTAC
TATGATGCCAGTTAATGAAAAATTCTTGGAATCAGCTGGGAAAGACTTTGGTAGCGTGAAACCAAGTGGTATCCTCTACA
ACGGTCCATACATTTTGAAATCCTTCACTTCAAAATCACAAATTGAATTGGATAAAAACCCAGAATACTACGACAAGAAA
AATGTTCACATCGATACCGTTAAATTGACTTACTTCGATGGCTCTGACCAAGACTATCTCGCTCGTAACTTCTCAGATGG
CAACTTATCTACTGCCCGTCTCTTCCCAACGAGCTCAACTTACACTACGATTCAAAAGAAATTCAAGGATAACATCGTTT
ATTCACCACAAGATGCGGTTGCCTACTATGCTTACTTCAATGTAAACCGTCAAAACTACGGTCATACGAAGAAGACTTCT
GACGAGCAAAAGAACAGCACTAAGACAGCTCTTCAAAACAAAAACTTCCGTCAAGCCTTGAACTTTGCTTTGGATAGAAC
TTCATACAGTGCTCAAGCTAATGGGAAAGATGGAGCAACCAAAACCCTTCGTACCCTACTAGTTCCACCTACATTTGTGC
AAGCCAACGGAAAAGATTTCGGTACGCTCGTTGAAGAAAAACTTGCCGCAACAGGAGATGAGTGGAAAGGTGTGAGCTTT
GCCGATGCTCAAGATAGCTTGCATAATGCAGACAAAGCCAAAGCAGAACTTGCAAAAGCAAAATCTGAATTGCAATCACA
AGGGGTTCAATTCCCAATCCATATCGACTATGTCGTAGACCAATCTTCTAGCTCACTTGTTCAACAAGCAGACTCTATGA
AGAGCTCTATCGAATCTGCTCTTGGTAAAGACAATGTCGTGATTGACGTACAAAAATTGTCTACAGACGATGCGGATAAC
GCTACTTACTTTGCCCAATCACCAGATCAAAAAGACTTTGACATGGATATCACTGGTTGGGGACCTGACTTCCAAGACCC
ATCTACTTACTTAGATATCTTGAACCCAACAGATGGTTCAACCTTGACTGGTATGGGACTTGATCCTAAGAAAGACCAAG
CGCTCATCGAGAAAATTGGTTTGAACCAATACAAAGAATTGCTAGATGCTGCCAATGCTGAAAAATTGGATACCAATGCG
CGTTATGAAAAATATGCTGATGCCCAAGCTTGGTTGACAGAAAACGCAATTGTTCTTCCAATCTACTCTAAGGGTGGAGT
TCCATCTATCACGAAGGTAACGCCATTCTCAGCAGCAAATTCTGCAATTGGTATTAAAGGTGAAACAAGCTTCTTCAAAT
ACCAAAAACTTCAAGATAAGACAGTCACAACTGCTGACTACGAAAAAGCTTATAAGAATTGGTTGAAAGAAAAAGAAGAA
TCAAACAAAAAAGCGCAAGAAGAACTTGCAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V1Y8L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.535

100

0.569
  amiA3 Streptococcus thermophilus LMG 18311

55.994

100

0.564
  amiA3 Streptococcus thermophilus LMD-9

55.994

100

0.564