Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SM121_RS08540 Genome accession   NZ_CP139418
Coordinates   1751685..1753652 (-) Length   655 a.a.
NCBI ID   WP_155125588.1    Uniprot ID   A0A6A8V603
Organism   Streptococcus dentalis strain S1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746685..1758652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS08520 (SM121_08520) - 1749048..1749680 (-) 633 WP_320910861.1 DUF421 domain-containing protein -
  SM121_RS08525 (SM121_08525) - 1749677..1750129 (-) 453 WP_201036876.1 DUF3290 family protein -
  SM121_RS08530 (SM121_08530) - 1750265..1751092 (+) 828 WP_049522944.1 exodeoxyribonuclease III -
  SM121_RS08535 (SM121_08535) - 1751104..1751490 (+) 387 WP_155125590.1 VOC family protein -
  SM121_RS08540 (SM121_08540) amiA3 1751685..1753652 (-) 1968 WP_155125588.1 peptide ABC transporter substrate-binding protein Regulator
  SM121_RS08545 (SM121_08545) nth 1753918..1754541 (-) 624 WP_003006251.1 endonuclease III -
  SM121_RS08550 (SM121_08550) - 1754646..1754954 (-) 309 WP_049473168.1 hypothetical protein -
  SM121_RS08555 (SM121_08555) - 1754977..1755669 (-) 693 WP_320910862.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  SM121_RS08560 (SM121_08560) macP 1755694..1756029 (-) 336 WP_004219826.1 cell wall synthase accessory phosphoprotein MacP -
  SM121_RS08565 (SM121_08565) - 1756041..1756586 (-) 546 WP_320910863.1 NUDIX hydrolase -
  SM121_RS08570 (SM121_08570) glmU 1756596..1757975 (-) 1380 WP_320911327.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72254.56 Da        Isoelectric Point: 5.8409

>NTDB_id=909504 SM121_RS08540 WP_155125588.1 1751685..1753652(-) (amiA3) [Streptococcus dentalis strain S1]
MKAKKLLALAGVSVAGAFLLAACGGGSSNQATYSFVYSADPNTLDYIAATRTTTSDITSNLVDGLLENDRYGNFVPSLAE
DWTVSEDGLTYTYKLRKDAKWYTSEGEEYGAVTAQDFVTGIKHAVESKSEGLFLIQNSIKGLDAYVKGETKDFKTVGVKA
LDDHTIQYTLVRPESFWNSKTTSGVLFPVNADFLKSQGKDFGSLKPSSILYNGPYYLKSLTSKSEIQLVKNKDYYDAKNV
HIDNVKLTFNDGSNPDSIIKNFEKGQYSFASVMPNSSTYKSVKKNFGDNIVYGLQLGTSYYLGFNLDRQKYDHTAKTTDE
QKASAKKAILNKDFRQAVNFAFDRKSYAAQVSGSDAAENTLRSTLVPPTYVQVNGEDFGKVVEKQLVTYGDQWKGVNLDD
GQTSLYSPEKAKASFAKAKAELQKQGVQFPIHLDYIVSQVDNSMVQQASSFKQSVESALGADNVVVDLQKVSDDDFQNIT
YFSDTAAARDYDISGGGWQPDYQDPSTYLESISPVNGSVFYYLGIDAGSNNPAIATVGLDQYANMLKDADAELLDQAKRY
EKYAAAQAWLTDSSITLPTVSNGGAPMLQRTVPYSRASSWVGTKGTGTFYKYLEMSKDVVTTKDFNKAKEEWLKKKAESN
KKAQEDLKDHIEKKK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=909504 SM121_RS08540 WP_155125588.1 1751685..1753652(-) (amiA3) [Streptococcus dentalis strain S1]
ATGAAAGCAAAAAAACTGTTAGCTCTTGCAGGAGTTTCTGTTGCAGGTGCCTTTCTCTTAGCAGCGTGTGGCGGTGGTAG
TAGCAATCAAGCAACCTACTCATTCGTATATTCAGCGGATCCAAATACATTGGATTATATCGCTGCAACTCGTACAACGA
CTTCAGATATCACAAGTAACCTTGTAGATGGTCTTCTTGAAAACGACCGATACGGAAATTTTGTGCCAAGTCTAGCAGAA
GATTGGACTGTCTCTGAAGATGGATTAACCTATACTTACAAACTTCGTAAGGATGCCAAATGGTATACAAGTGAGGGTGA
AGAGTATGGTGCTGTAACAGCTCAAGACTTTGTTACAGGGATCAAACACGCGGTTGAGTCAAAATCAGAAGGTCTCTTCT
TGATTCAAAATTCGATCAAAGGTTTGGATGCCTATGTAAAAGGAGAAACGAAGGACTTTAAAACAGTTGGAGTCAAAGCT
TTAGACGACCACACCATCCAATATACCTTGGTCCGTCCAGAAAGCTTCTGGAACTCAAAAACAACTTCAGGTGTTCTTTT
CCCAGTCAATGCAGATTTCTTGAAATCTCAAGGAAAAGATTTTGGTTCGTTGAAACCTAGTAGCATCTTATACAATGGTC
CATATTACTTGAAATCATTGACTTCAAAATCTGAGATTCAATTGGTCAAGAACAAAGACTATTACGATGCAAAAAATGTT
CATATCGACAATGTCAAATTGACCTTTAACGATGGATCAAACCCAGATTCTATCATTAAGAACTTTGAAAAAGGTCAATA
TTCCTTTGCCTCTGTTATGCCAAACAGTTCGACGTATAAGAGCGTCAAGAAAAACTTTGGTGACAACATTGTCTACGGTT
TGCAATTGGGAACATCTTACTATCTTGGATTCAACTTGGACCGTCAAAAGTATGATCACACAGCCAAAACAACGGATGAA
CAAAAAGCTTCTGCCAAGAAAGCAATCTTGAATAAGGATTTCCGTCAAGCGGTGAACTTTGCCTTTGACCGCAAATCTTA
TGCGGCGCAAGTATCTGGATCTGACGCGGCTGAAAATACCCTTCGTAGCACCTTGGTGCCACCAACTTATGTCCAAGTCA
ATGGAGAAGATTTTGGTAAAGTGGTTGAAAAACAATTGGTTACCTATGGGGATCAATGGAAGGGTGTGAATCTGGACGAT
GGTCAAACAAGCCTGTATAGCCCAGAAAAAGCCAAGGCTTCATTTGCGAAAGCCAAAGCTGAATTGCAAAAACAAGGAGT
TCAATTCCCAATTCATTTGGACTACATTGTCAGCCAAGTGGACAACAGCATGGTCCAACAAGCGAGCTCTTTCAAACAAT
CTGTAGAGTCAGCGCTTGGTGCAGACAATGTTGTAGTGGATCTTCAAAAGGTATCGGATGATGATTTCCAAAATATCACC
TACTTCAGTGATACAGCTGCTGCAAGAGACTACGATATCTCAGGCGGTGGATGGCAACCTGACTACCAAGATCCATCGAC
TTACCTCGAAAGTATCAGCCCAGTAAATGGTTCTGTCTTCTACTATCTTGGTATTGATGCAGGTTCAAACAACCCAGCCA
TTGCAACAGTTGGGTTGGATCAATACGCTAACATGTTGAAAGATGCCGATGCTGAATTGTTGGATCAAGCAAAACGCTAT
GAAAAATATGCAGCAGCGCAAGCTTGGTTGACAGATAGCTCGATTACGCTTCCAACTGTCTCAAATGGTGGTGCTCCAAT
GCTTCAACGGACCGTACCATACAGCCGTGCTTCTTCATGGGTAGGTACTAAAGGAACAGGAACATTCTACAAATACCTTG
AAATGTCTAAAGATGTTGTCACCACAAAAGACTTTAACAAGGCCAAAGAAGAATGGTTGAAGAAAAAAGCCGAATCCAAT
AAAAAAGCTCAAGAAGATCTCAAAGATCACATTGAGAAGAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8V603

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.333

100

0.537
  amiA3 Streptococcus thermophilus LMG 18311

53.182

100

0.536
  amiA Streptococcus salivarius strain HSISS4

52.504

100

0.528