Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SM121_RS05850 Genome accession   NZ_CP139418
Coordinates   1201391..1203376 (+) Length   661 a.a.
NCBI ID   WP_320910602.1    Uniprot ID   -
Organism   Streptococcus dentalis strain S1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196391..1208376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS05835 (SM121_05835) gshAB 1196821..1199085 (-) 2265 WP_195487817.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  SM121_RS05840 (SM121_05840) - 1199467..1199673 (+) 207 Protein_1113 IS3 family transposase -
  SM121_RS05845 (SM121_05845) - 1200224..1201261 (+) 1038 WP_320910601.1 M42 family metallopeptidase -
  SM121_RS05850 (SM121_05850) amiA 1201391..1203376 (+) 1986 WP_320910602.1 peptide ABC transporter substrate-binding protein Regulator
  SM121_RS05855 (SM121_05855) - 1203497..1206526 (+) 3030 WP_320910603.1 CocE/NonD family hydrolase -
  SM121_RS05860 (SM121_05860) trxA 1206624..1206938 (+) 315 WP_049483759.1 thioredoxin -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73597.21 Da        Isoelectric Point: 5.3203

>NTDB_id=909492 SM121_RS05850 WP_320910602.1 1201391..1203376(+) (amiA) [Streptococcus dentalis strain S1]
MKKRNVIALAGVALLSAGILAACSGGSKSSSSSNGQKFSYVYETEPENLNYITSGKAATHDITGNLIDGLFENDKYGNLI
PSLAKDWTVSQDGLTYTYKLRDDAKWYDSEGEEYADVTAKDFVTGIKYAADNKSEMLYIIQDSIKGLNDYVSGKNKDFSA
VGVKAVDDHTLQITLNQPESYWNSKLTLGITFPVNEKFVKSKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMTKNENY
WDKDKVYISDVKLEFYDGQDQSKLAKSFGENTLSLAKLFPTGSGYSEQAKEFKDEITYTPQDAASYVIGTNIDRQSYKHT
AKKTDEEKQSTKKALLNKDFRQAISFAFNREAYAAQLNGKDGASKIIRNLYIPPTFVQADGKTFGEMVKTQLDTYGDEWK
STKLDDGQNGLFDAKKAKEEFAKAKTALEAEGVKFPIHIDMPVDQTTPSRVQRVQSFKQSVEEALGKENIVIDIQMLSKE
DLQNVTLFAPNAAGEDWDLSDNVGWNPDYQDPSTYMDILKASSGENTKTFLGFDPSENNEAAKKVGLYDFEKMIKDAGAE
SQDVNKRYEKYAAAQAWLTDSALVIPTSSSTGRPFLTRIEPFSAPFAWTGGKGKDHVIYKGMKLQDKAVTTADYNKALEK
WQKEQAESNKKAQEDLKKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=909492 SM121_RS05850 WP_320910602.1 1201391..1203376(+) (amiA) [Streptococcus dentalis strain S1]
ATGAAAAAAAGAAATGTCATTGCACTTGCGGGAGTTGCCCTCCTTTCAGCAGGTATCCTAGCAGCTTGTTCAGGTGGTTC
TAAATCATCTAGCTCAAGCAACGGTCAAAAATTCTCATATGTCTATGAGACTGAGCCAGAAAACCTAAACTATATCACAT
CTGGTAAAGCAGCAACCCACGATATCACAGGAAACTTGATTGATGGTTTGTTTGAAAATGATAAATACGGGAACTTGATT
CCATCTCTTGCAAAAGATTGGACAGTTTCGCAAGATGGCTTGACTTATACTTATAAACTTCGTGATGATGCTAAATGGTA
TGATTCAGAAGGCGAAGAGTATGCGGATGTAACAGCTAAAGATTTCGTCACAGGGATCAAATATGCGGCTGATAACAAAT
CAGAAATGCTCTACATCATCCAAGATTCTATCAAAGGCTTGAATGACTACGTCAGTGGTAAAAATAAAGATTTCTCAGCT
GTAGGAGTAAAAGCAGTTGATGATCATACCCTTCAAATCACTTTGAACCAACCAGAATCTTACTGGAACTCTAAATTGAC
TCTTGGGATCACTTTCCCTGTCAACGAAAAATTCGTGAAATCAAAAGGGGATAAATTCGCTCAAGCAAGTGATACTAGCT
CCCTTCTTTACAATGGTCCTTACATCTTGAAGAGCTTTACTTCAAAATCTTCTATCGAAATGACCAAGAATGAAAACTAC
TGGGATAAAGACAAGGTCTACATCTCAGATGTGAAATTGGAATTCTACGATGGACAAGACCAAAGTAAATTGGCCAAATC
ATTCGGAGAAAATACTCTTAGCTTGGCAAAACTCTTCCCAACTGGATCTGGTTACTCAGAGCAAGCTAAAGAATTCAAAG
ATGAAATCACCTACACTCCTCAAGACGCCGCTTCTTATGTTATTGGTACCAACATCGACCGTCAATCTTACAAACACACT
GCTAAGAAGACCGATGAAGAAAAACAATCTACTAAGAAAGCTCTCTTGAACAAGGACTTCCGTCAAGCGATCAGCTTTGC
CTTCAACCGTGAAGCGTATGCTGCTCAATTGAACGGAAAAGACGGAGCAAGCAAGATCATCCGTAACCTCTACATTCCAC
CAACATTTGTCCAAGCTGATGGCAAGACCTTTGGTGAAATGGTGAAAACACAATTGGATACCTACGGAGATGAGTGGAAA
TCTACTAAACTAGACGATGGTCAAAATGGTCTCTTCGATGCTAAGAAAGCGAAGGAAGAGTTTGCAAAAGCGAAGACTGC
CTTGGAAGCAGAAGGTGTGAAATTCCCAATTCACATCGATATGCCTGTAGACCAAACCACACCATCAAGAGTTCAACGGG
TACAATCCTTCAAACAATCAGTTGAAGAAGCACTTGGTAAAGAAAATATCGTCATCGATATCCAAATGCTTTCGAAAGAA
GACCTTCAAAATGTGACCCTCTTTGCGCCAAATGCGGCTGGCGAAGATTGGGATCTCTCTGATAATGTTGGTTGGAACCC
TGACTACCAAGATCCATCAACTTACATGGATATCTTGAAAGCTTCATCTGGTGAAAATACTAAGACTTTCCTTGGATTTG
ACCCAAGTGAAAACAATGAAGCAGCTAAAAAAGTTGGTCTTTACGATTTTGAAAAGATGATCAAAGATGCTGGTGCAGAA
TCACAAGACGTCAACAAACGCTACGAAAAATATGCGGCAGCGCAAGCTTGGTTGACAGATAGTGCCCTTGTTATCCCAAC
TTCTTCATCAACTGGACGTCCATTCTTGACACGTATCGAACCATTCTCAGCTCCATTTGCATGGACTGGTGGTAAAGGAA
AAGACCACGTGATCTACAAAGGAATGAAACTCCAAGATAAAGCTGTGACAACTGCTGACTACAACAAAGCCCTTGAAAAA
TGGCAAAAAGAACAAGCAGAGTCAAACAAAAAAGCACAAGAAGATCTTAAGAAACACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.949

100

0.57
  amiA3 Streptococcus thermophilus LMD-9

56.798

100

0.569
  amiA3 Streptococcus thermophilus LMG 18311

56.344

100

0.564