Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SM121_RS05035 Genome accession   NZ_CP139418
Coordinates   1029784..1030593 (+) Length   269 a.a.
NCBI ID   WP_320910526.1    Uniprot ID   -
Organism   Streptococcus dentalis strain S1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1024784..1035593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS05020 (SM121_05020) - 1026179..1027228 (-) 1050 WP_320910525.1 DUF389 domain-containing protein -
  SM121_RS05025 (SM121_05025) micA 1027730..1028431 (+) 702 WP_003005102.1 response regulator YycF Regulator
  SM121_RS05030 (SM121_05030) micB 1028424..1029776 (+) 1353 WP_003005638.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SM121_RS05035 (SM121_05035) vicX 1029784..1030593 (+) 810 WP_320910526.1 MBL fold metallo-hydrolase Regulator
  SM121_RS05040 (SM121_05040) - 1030713..1031099 (+) 387 WP_320910527.1 YbaN family protein -
  SM121_RS05045 (SM121_05045) - 1031351..1031812 (-) 462 WP_320910528.1 hypothetical protein -
  SM121_RS05050 (SM121_05050) rnc 1032146..1032847 (+) 702 WP_320910529.1 ribonuclease III -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29832.86 Da        Isoelectric Point: 6.1238

>NTDB_id=909490 SM121_RS05035 WP_320910526.1 1029784..1030593(+) (vicX) [Streptococcus dentalis strain S1]
MTEEGFKYSILASGSSGNSFYLETPKKKLLIDAGLSGKKITGLLAEIDRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEATWKAMEGTKYLGKVDDAQKHIFEMGKTKTFGYIDIESFGVSHDAVAPQFYRFMKDGKSFVMLTDTGYVSDRLAG
IVADADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMEN
QLARADLAVGHDFEVLDTSPDTATPLTKI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=909490 SM121_RS05035 WP_320910526.1 1029784..1030593(+) (vicX) [Streptococcus dentalis strain S1]
ATGACAGAAGAGGGATTTAAGTATAGTATTTTAGCTTCAGGTTCTAGTGGGAATTCTTTCTACCTTGAGACGCCAAAGAA
AAAACTGCTTATTGATGCAGGGCTATCAGGGAAAAAGATTACGGGACTATTGGCTGAAATTGATCGCAAACCAGAAGACT
TAGATGCCATTTTGATTACGCACGAACACTCAGACCATATCCATGGTGTGGGTGTTTTAGCGCGGAAATACGGCATGGAT
CTATATGCTAATGAAGCAACTTGGAAGGCTATGGAAGGCACCAAGTATCTAGGAAAGGTCGATGATGCTCAAAAGCACAT
TTTTGAAATGGGGAAGACCAAGACATTTGGCTATATCGATATTGAAAGTTTTGGGGTCAGTCACGATGCTGTTGCCCCTC
AATTCTATCGCTTTATGAAGGATGGAAAGAGCTTCGTCATGCTGACGGATACGGGCTATGTGAGTGATCGCTTGGCAGGC
ATCGTCGCGGATGCTGATGGCTATCTGATTGAGTCCAACCATGATGTAGAGATCCTTCGAGCAGGTTCTTATGCTTGGCG
CTTGAAGCAGCGGATCTTGTCAGACCTAGGCCACCTTTCTAACGAAGATGGTGCCGATGCCATGATCCGAACCTTGGGAA
ATCGCACCAAGAAGATTTATCTGGGGCATTTGTCAAAAGAGAACAATATTAAAGAATTGGCTCATATGACCATGGAGAAT
CAACTGGCTCGAGCAGATCTAGCTGTCGGCCATGATTTTGAGGTGTTAGATACCTCGCCAGATACCGCGACCCCTTTGAC
GAAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773