Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   SM121_RS05000 Genome accession   NZ_CP139418
Coordinates   1020202..1021206 (+) Length   334 a.a.
NCBI ID   WP_003005429.1    Uniprot ID   A0A930RQ81
Organism   Streptococcus dentalis strain S1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1015202..1026206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS04980 (SM121_04980) - 1017075..1017917 (+) 843 WP_320910522.1 metallophosphoesterase family protein -
  SM121_RS04985 (SM121_04985) - 1018029..1018472 (+) 444 WP_155172271.1 Rrf2 family transcriptional regulator -
  SM121_RS04990 (SM121_04990) - 1018599..1018937 (-) 339 WP_155172268.1 hypothetical protein -
  SM121_RS04995 (SM121_04995) - 1018959..1020041 (-) 1083 WP_155172265.1 Xaa-Pro peptidase family protein -
  SM121_RS05000 (SM121_05000) ccpA 1020202..1021206 (+) 1005 WP_003005429.1 catabolite control protein A Regulator
  SM121_RS05005 (SM121_05005) - 1021348..1022346 (+) 999 WP_320910523.1 glycosyltransferase -
  SM121_RS05010 (SM121_05010) - 1022348..1023670 (+) 1323 WP_125826745.1 glycosyltransferase family 4 protein -
  SM121_RS05015 (SM121_05015) thrS 1024024..1025967 (+) 1944 WP_320910524.1 threonine--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37095.20 Da        Isoelectric Point: 6.9973

>NTDB_id=909487 SM121_RS05000 WP_003005429.1 1020202..1021206(+) (ccpA) [Streptococcus dentalis strain S1]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIERLDYRPNAVARGLASKKTTTVGVVIPNITNSYFS
TLAKGIDDIAEMYKYNIVLANSDEDDDKEVSVVNNLFSKQVDGIIFMGYHLTEKIRSEFSRSRTPVVLAGTVDVEHQLPS
VNIDYKQATVDAVTQLAKHNKKIAFVSGPLVDDINGKIRLTGYKEALKAKKLSYSEGLVFESKYRYDEGYNLAERIIASK
ATAAFVTGDELAAGLLNGLSDKGIKVPEDFEIITSDDSQVTRYTRPNLSTIGQPLYDLGAISMRMLTKIMHKEELEEREV
LLSHTINQRGTTKK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=909487 SM121_RS05000 WP_003005429.1 1020202..1021206(+) (ccpA) [Streptococcus dentalis strain S1]
ATGAATACAGACGATACAGTAACGATTTATGATGTCGCCCGTGAAGCAGGGGTTTCAATGGCAACCGTTAGTCGTGTAGT
GAATGGAAATAAGAACGTTAAAGAAAATACACGTAAAAAAGTATTAGAAGTGATCGAACGCTTGGATTACCGTCCAAATG
CTGTTGCGCGTGGTCTTGCCAGCAAGAAAACCACAACAGTCGGTGTTGTTATTCCAAACATCACGAACAGCTATTTCTCT
ACATTGGCTAAGGGGATCGATGACATTGCTGAAATGTACAAGTACAATATTGTTCTTGCAAATAGCGATGAAGACGATGA
CAAAGAAGTTTCAGTGGTAAACAACCTTTTTTCAAAACAAGTGGATGGCATCATTTTCATGGGCTATCATTTGACAGAAA
AGATTCGCTCAGAATTTTCACGCTCTCGTACGCCGGTTGTCCTTGCTGGGACAGTGGATGTTGAACACCAATTACCAAGT
GTCAATATTGACTACAAGCAAGCAACCGTTGATGCTGTTACACAGTTGGCAAAACACAACAAGAAAATTGCTTTTGTAAG
CGGCCCATTGGTGGATGATATTAATGGAAAAATTCGTTTGACAGGCTACAAAGAAGCTTTGAAAGCGAAAAAATTGAGCT
ATAGCGAAGGACTTGTGTTTGAATCCAAGTACCGTTACGATGAAGGATATAACTTGGCAGAACGCATCATTGCATCGAAA
GCAACAGCTGCCTTTGTAACAGGTGATGAATTGGCTGCAGGTCTCTTGAACGGTTTGTCTGATAAAGGGATCAAGGTACC
AGAAGACTTTGAAATTATCACCAGCGATGATTCACAAGTAACTCGTTACACGCGTCCAAATCTATCAACGATTGGCCAAC
CTTTGTATGACCTTGGTGCAATCAGTATGCGTATGTTGACCAAGATCATGCACAAAGAAGAGTTGGAAGAACGCGAGGTA
CTGTTGTCTCATACGATCAACCAACGTGGAACGACCAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(180-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

91.018

100

0.91
  ccpA Streptococcus pneumoniae D39

85.329

100

0.853
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.798

99.102

0.563