Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SM121_RS03810 Genome accession   NZ_CP139418
Coordinates   796972..797469 (+) Length   165 a.a.
NCBI ID   WP_003005554.1    Uniprot ID   -
Organism   Streptococcus dentalis strain S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 791972..802469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS03790 (SM121_03790) - 794032..794439 (-) 408 WP_118228479.1 hypothetical protein -
  SM121_RS03795 (SM121_03795) - 794420..795322 (-) 903 WP_155126446.1 phosphodiester glycosidase family protein -
  SM121_RS03800 (SM121_03800) - 795309..796361 (-) 1053 WP_155126449.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  SM121_RS03805 (SM121_03805) rpsF 796661..796951 (+) 291 WP_003005040.1 30S ribosomal protein S6 -
  SM121_RS03810 (SM121_03810) ssbA 796972..797469 (+) 498 WP_003005554.1 single-stranded DNA-binding protein Machinery gene
  SM121_RS03815 (SM121_03815) rpsR 797511..797750 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SM121_RS03820 (SM121_03820) - 797985..798506 (+) 522 WP_320911206.1 GNAT family N-acetyltransferase -
  SM121_RS03825 (SM121_03825) - 798541..799218 (-) 678 WP_049488557.1 DUF1129 domain-containing protein -
  SM121_RS03830 (SM121_03830) - 799247..800191 (-) 945 WP_003005422.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17933.71 Da        Isoelectric Point: 4.9371

>NTDB_id=909483 SM121_RS03810 WP_003005554.1 796972..797469(+) (ssbA) [Streptococcus dentalis strain S1]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRAAREGHAAGGYSSGNGGFAGNATPSFGGSEPSNAAPNFGREENPFGANPMDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=909483 SM121_RS03810 WP_003005554.1 796972..797469(+) (ssbA) [Streptococcus dentalis strain S1]
ATGATTAACAATGTTGTACTTGTCGGTCGTATGACCCGTGATGCTGAACTTCGCTACACTCCAAGCAATCAAGCAGTTGC
TACTTTCAGCCTAGCTGTCAATCGCAACTTCAAGAGTCAAAATGGAGAGCGCGAAGCCGATTTCATCAACTGTGTGATCT
GGCGTCAGCAAGCAGAAAACTTAGCCAACTGGGCTAAGAAAGGTGCTTTGATTGGGATTACCGGTCGCATTCAAACACGT
AATTACGAAAACCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCAGACAGCTTCCAACTATTGGAAAGCCGTGC
AGCACGCGAAGGGCATGCAGCTGGTGGCTATTCATCAGGCAATGGTGGTTTTGCTGGAAATGCAACCCCAAGCTTTGGTG
GATCTGAACCAAGCAATGCAGCGCCAAACTTTGGTCGTGAAGAAAATCCATTTGGAGCGAATCCAATGGATATCTCAGAC
GACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.857

100

0.624
  ssb Latilactobacillus sakei subsp. sakei 23K

58.235

100

0.6
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.061

0.364