Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SM121_RS00800 Genome accession   NZ_CP139418
Coordinates   171226..173202 (-) Length   658 a.a.
NCBI ID   WP_003004166.1    Uniprot ID   -
Organism   Streptococcus dentalis strain S1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 166226..178202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS00780 (SM121_00780) - 166229..166957 (-) 729 WP_151379114.1 ABC transporter ATP-binding protein -
  SM121_RS00785 (SM121_00785) - 166950..167804 (-) 855 WP_151379113.1 SDR family oxidoreductase -
  SM121_RS00790 (SM121_00790) - 167821..168270 (-) 450 WP_003013716.1 MarR family winged helix-turn-helix transcriptional regulator -
  SM121_RS00795 (SM121_00795) leuS 168601..171102 (-) 2502 WP_003004499.1 leucine--tRNA ligase -
  SM121_RS00800 (SM121_00800) amiA3 171226..173202 (-) 1977 WP_003004166.1 peptide ABC transporter substrate-binding protein Regulator
  SM121_RS00805 (SM121_00805) - 173368..174690 (+) 1323 WP_050783833.1 D-alanyl-D-alanine carboxypeptidase family protein -
  SM121_RS00810 (SM121_00810) - 175007..176098 (-) 1092 WP_003004290.1 glycerol dehydrogenase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72795.79 Da        Isoelectric Point: 5.2823

>NTDB_id=909462 SM121_RS00800 WP_003004166.1 171226..173202(-) (amiA3) [Streptococcus dentalis strain S1]
MNKGKVLLATSALLLSAGVLAACSGGKSGSSGEQTFSYVYTQDPDTLDYSISNKKSTSEFTGNAIDGLLEVDKYGNLIPS
LAKDWTVSKDGLTYTYKLRKGVKWMTSEGEEYGEVKAQDFVTGLKHAADKKSQAIYLVQKSVKGLDDYVSGKTTDFSTVG
VKAIDDYTVQYTLSQPESFWNSKTTMGILMPVNGEFLKSKGDNYGQGTSPSSILYCGPYLIKSITSKSSAILEKNPTYWD
ADNVKISKVKLTYYDGQDSESLIRGFDNGDYTVARVFPNGSNYKSVEKKHKDDIVYTDQGSSTYNLSFNIDRQAYEITKK
TTDAQKTSTKKAILNKDFRQAIMFAFNRKAYVAQTNGEAGANKVIRNTFTPPNFVQIDGKQFGDAVEKDLEAYGDEWKGV
SVADGKDTLYNPTKAKEEFAKAKADLQAQGVEFPIHLDLPTSSTYTDGIKQAQSFKQSVESTLGAENIVIDLNMISEDDL
QRVTYFAESASQQDWDLNNNLGWGPDYTDPSSYIDITSGKSGENANSYFGFDAGTDNAAAKAAGFDEYDQLIEDAHNETK
DVNKRYEKYAAAQAWLTDSALLIPIHSDGASPVVRKTVPYSAAFAWTGHKGQSFNYKYLEVQDKVVSAKDYDKARDQWKK
EKEKSNKKAQEELEKHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=909462 SM121_RS00800 WP_003004166.1 171226..173202(-) (amiA3) [Streptococcus dentalis strain S1]
ATGAACAAAGGGAAGGTACTCTTAGCTACCAGCGCTCTGCTTTTATCAGCTGGTGTACTGGCAGCCTGCTCAGGAGGGAA
ATCTGGAAGTTCTGGCGAACAGACTTTTAGCTATGTCTATACCCAGGATCCAGATACCCTCGACTATTCGATTTCTAATA
AAAAATCGACTTCCGAGTTTACAGGAAATGCGATAGATGGCTTGTTGGAAGTGGACAAGTACGGGAACTTAATCCCATCG
CTTGCTAAAGACTGGACTGTTTCCAAGGATGGCTTGACCTATACTTATAAACTCCGTAAAGGGGTCAAATGGATGACTTC
TGAAGGGGAAGAATATGGAGAAGTCAAGGCCCAAGACTTTGTCACAGGTCTCAAGCACGCAGCAGACAAGAAATCACAAG
CAATTTACTTGGTCCAAAAATCTGTCAAAGGCTTGGATGATTATGTTTCAGGGAAGACAACTGATTTTTCAACAGTTGGT
GTAAAAGCTATTGACGATTACACCGTTCAATATACCCTGAGCCAACCAGAAAGTTTCTGGAATTCTAAGACTACGATGGG
GATCTTGATGCCGGTTAATGGAGAATTCCTGAAATCTAAGGGAGATAACTATGGTCAAGGGACCTCTCCGTCTAGTATCC
TCTACTGCGGTCCTTATTTGATCAAATCCATCACTTCTAAATCTTCTGCGATATTGGAAAAGAACCCAACATACTGGGAT
GCGGATAATGTTAAGATCAGTAAAGTGAAGCTGACCTATTATGATGGGCAAGACTCCGAGTCTCTGATCCGTGGATTTGA
TAACGGCGACTATACAGTTGCTCGTGTCTTCCCAAATGGTTCCAACTATAAGAGTGTAGAGAAGAAGCATAAGGACGACA
TTGTCTATACTGACCAAGGTTCCTCAACCTACAACCTTTCCTTCAACATTGACCGTCAGGCCTATGAAATCACAAAGAAG
ACTACTGATGCTCAAAAGACTTCAACTAAGAAAGCAATCTTAAATAAGGACTTCCGTCAAGCCATTATGTTTGCCTTTAA
CCGCAAGGCTTATGTAGCGCAAACTAACGGGGAAGCGGGTGCCAATAAGGTCATCCGTAATACCTTTACGCCACCAAACT
TTGTCCAAATCGATGGCAAACAATTTGGTGATGCAGTAGAAAAAGACTTGGAAGCTTATGGGGATGAATGGAAAGGGGTC
TCTGTCGCAGATGGAAAAGACACCCTCTACAATCCAACCAAGGCCAAAGAAGAGTTTGCCAAAGCCAAGGCAGATTTGCA
AGCTCAAGGAGTTGAATTCCCAATTCATTTGGACCTTCCAACTTCTTCAACTTATACAGATGGGATCAAACAAGCTCAAT
CCTTTAAACAGTCAGTTGAATCTACACTAGGAGCAGAAAATATTGTCATCGATTTGAATATGATTTCTGAAGATGATCTG
CAACGGGTTACCTACTTTGCTGAAAGTGCTTCGCAACAAGACTGGGATTTGAACAATAACTTGGGTTGGGGACCAGACTA
TACGGACCCATCTTCTTACATCGACATCACTAGTGGTAAATCCGGCGAAAACGCCAATTCTTACTTTGGATTCGATGCTG
GTACGGATAATGCAGCCGCAAAAGCAGCTGGTTTTGATGAATATGATCAATTGATCGAAGATGCGCACAATGAAACCAAA
GATGTGAACAAGCGTTACGAAAAATATGCTGCCGCTCAAGCTTGGTTGACCGATAGTGCCCTCTTGATTCCGATCCATTC
AGATGGAGCTTCTCCAGTCGTTCGTAAGACTGTACCATACTCTGCAGCCTTTGCTTGGACAGGCCACAAGGGTCAATCCT
TCAACTATAAATATTTAGAAGTTCAAGACAAGGTCGTATCGGCTAAAGACTACGACAAAGCGCGTGATCAATGGAAGAAA
GAAAAAGAAAAATCCAATAAAAAAGCGCAAGAAGAACTTGAAAAGCATGTGAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.212

100

0.564
  amiA3 Streptococcus thermophilus LMG 18311

55.909

100

0.561
  amiA Streptococcus salivarius strain HSISS4

55.387

100

0.555