Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NCY62_RS15360 Genome accession   NZ_CP139356
Coordinates   3193271..3193675 (-) Length   134 a.a.
NCBI ID   WP_250733662.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A45P     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3188271..3198675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY62_RS15330 (NCY62_15385) - 3188355..3188624 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  NCY62_RS15335 (NCY62_15390) rapZ 3188621..3189472 (-) 852 WP_002117179.1 RNase adapter RapZ -
  NCY62_RS15340 (NCY62_15395) panC 3189496..3190344 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  NCY62_RS15345 (NCY62_15400) panB 3190348..3191157 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  NCY62_RS15350 (NCY62_15405) folK 3191203..3191685 (-) 483 WP_014208398.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  NCY62_RS15355 (NCY62_15410) pcnB 3191682..3193145 (-) 1464 WP_002117192.1 polynucleotide adenylyltransferase PcnB -
  NCY62_RS15360 (NCY62_15415) comEA 3193271..3193675 (-) 405 WP_250733662.1 ComEA family DNA-binding protein Machinery gene
  NCY62_RS15365 (NCY62_15420) mazG 3193644..3194450 (-) 807 WP_250733664.1 nucleoside triphosphate pyrophosphohydrolase -
  NCY62_RS15370 (NCY62_15425) - 3194563..3195336 (+) 774 WP_250733665.1 SDR family oxidoreductase -
  NCY62_RS15375 (NCY62_15430) relA 3195383..3197689 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15431.72 Da        Isoelectric Point: 10.4871

>NTDB_id=909083 NCY62_RS15360 WP_250733662.1 3193271..3193675(-) (comEA) [Acinetobacter pittii strain A45P]
MQLSMNLWKNKHNIFIILFWSLISSTLVQAQSFDQNFKEWKAKQQRYDQKLSMQCSAHSNSPKNSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=909083 NCY62_RS15360 WP_250733662.1 3193271..3193675(-) (comEA) [Acinetobacter pittii strain A45P]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTATTTTATTTTGGAGCCTGATCTCATCAACGCT
AGTTCAGGCTCAATCTTTTGACCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGTGCTCCGCTCATTCTAACAGTCCAAAAAATTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403