Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   NCY62_RS01820 Genome accession   NZ_CP139356
Coordinates   389874..390356 (+) Length   160 a.a.
NCBI ID   WP_002116770.1    Uniprot ID   A0A009RUX0
Organism   Acinetobacter pittii strain A45P     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384874..395356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY62_RS01810 (NCY62_01820) pilX 385188..385997 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NCY62_RS01815 (NCY62_01825) pilY1 386009..389863 (+) 3855 WP_057061736.1 PilC/PilY family type IV pilus protein Machinery gene
  NCY62_RS01820 (NCY62_01830) pilY2 389874..390356 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  NCY62_RS01825 (NCY62_01835) pilE 390353..390778 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  NCY62_RS01830 (NCY62_01840) rpsP 390926..391177 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  NCY62_RS01835 (NCY62_01845) rimM 391197..391745 (+) 549 WP_250733510.1 ribosome maturation factor RimM -
  NCY62_RS01840 (NCY62_01850) trmD 391788..392543 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NCY62_RS01845 (NCY62_01855) rplS 392763..393131 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  NCY62_RS01850 (NCY62_01860) lip 393184..394125 (-) 942 WP_080591800.1 lipase family alpha/beta hydrolase -
  NCY62_RS01855 (NCY62_01865) - 394241..395272 (-) 1032 WP_057061732.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17520.76 Da        Isoelectric Point: 8.4721

>NTDB_id=909065 NCY62_RS01820 WP_002116770.1 389874..390356(+) (pilY2) [Acinetobacter pittii strain A45P]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=909065 NCY62_RS01820 WP_002116770.1 389874..390356(+) (pilY2) [Acinetobacter pittii strain A45P]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.678

100

0.45