Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NCY62_RS01810 Genome accession   NZ_CP139356
Coordinates   385188..385997 (+) Length   269 a.a.
NCBI ID   WP_017481716.1    Uniprot ID   A0AAN4MGD2
Organism   Acinetobacter pittii strain A45P     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 380188..390997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY62_RS01775 (NCY62_01785) - 380746..380868 (-) 123 Protein_341 hypothetical protein -
  NCY62_RS01780 (NCY62_01790) rpoZ 380940..381218 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  NCY62_RS01785 (NCY62_01795) gmk 381291..381920 (-) 630 WP_002116973.1 guanylate kinase -
  NCY62_RS01790 (NCY62_01800) ispH 382043..382993 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NCY62_RS01795 (NCY62_01805) fimU 383163..383636 (+) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  NCY62_RS01800 (NCY62_01810) pilV 383630..384190 (+) 561 WP_081037637.1 type IV pilus modification protein PilV Machinery gene
  NCY62_RS01805 (NCY62_01815) pilW 384190..385191 (+) 1002 WP_057061737.1 PilW family protein Machinery gene
  NCY62_RS01810 (NCY62_01820) pilX 385188..385997 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NCY62_RS01815 (NCY62_01825) pilY1 386009..389863 (+) 3855 WP_057061736.1 PilC/PilY family type IV pilus protein Machinery gene
  NCY62_RS01820 (NCY62_01830) pilY2 389874..390356 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  NCY62_RS01825 (NCY62_01835) pilE 390353..390778 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28558.38 Da        Isoelectric Point: 7.7238

>NTDB_id=909063 NCY62_RS01810 WP_017481716.1 385188..385997(+) (pilX) [Acinetobacter pittii strain A45P]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=909063 NCY62_RS01810 WP_017481716.1 385188..385997(+) (pilX) [Acinetobacter pittii strain A45P]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAATTTTTGTTATAAGCCTGTTTCTACATCAACAAA
TTTTGCTCAGACTAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACGCAACGTATTCGGGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907