Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   SOI74_RS13410 Genome accession   NZ_CP139287
Coordinates   2831802..2832509 (-) Length   235 a.a.
NCBI ID   WP_005070320.1    Uniprot ID   A0A009I7W0
Organism   Acinetobacter pittii strain 564U     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2826802..2837509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS13390 (SOI74_13390) purA 2827884..2829203 (+) 1320 WP_002121613.1 adenylosuccinate synthase -
  SOI74_RS13395 (SOI74_13395) - 2829326..2829643 (+) 318 WP_002121533.1 hypothetical protein -
  SOI74_RS13400 (SOI74_13400) - 2829759..2830538 (+) 780 WP_002121572.1 M48 family metallopeptidase -
  SOI74_RS13405 (SOI74_13405) tas 2830593..2831642 (-) 1050 WP_182917452.1 NADP(H)-dependent aldo-keto reductase -
  SOI74_RS13410 (SOI74_13410) crp 2831802..2832509 (-) 708 WP_005070320.1 cAMP-activated global transcriptional regulator CRP Regulator
  SOI74_RS13415 (SOI74_13415) - 2832750..2832869 (+) 120 WP_002121587.1 hypothetical protein -
  SOI74_RS13420 (SOI74_13420) - 2832948..2833370 (+) 423 WP_002121528.1 OsmC family protein -
  SOI74_RS13425 (SOI74_13425) phnO 2833466..2833891 (+) 426 WP_057085591.1 GNAT family N-acetyltransferase -
  SOI74_RS13430 (SOI74_13430) - 2833888..2834697 (-) 810 WP_017386368.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26526.09 Da        Isoelectric Point: 4.6573

>NTDB_id=908825 SOI74_RS13410 WP_005070320.1 2831802..2832509(-) (crp) [Acinetobacter pittii strain 564U]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTVSDDDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=908825 SOI74_RS13410 WP_005070320.1 2831802..2832509(-) (crp) [Acinetobacter pittii strain 564U]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTGCGTGAAGATGATGAACGTGAAATTGTTGTTGCGTATTTAAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGAACTCGTGATGTCTGTGAAATTGCAGA
GATCTCTTATGACAACTTCCATGAACTTAGCAAACAATACCCAGACTTAAGCTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACTCGTAAAATGACAGATCTTGCGTTCATTGATGTGTCTGGCCGTATTGCTCGTTGTTTAATCGAT
CTATCTTCTCAACCTGAAGCAATGATTTTGCCGAATGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGTTCGCGTGAGATGGTTGGCCGTGTACTTAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCGA
TTCTTATTTTTGATGCATCATTAGAAGAAAACACTGTTTCTGATGATGACTACGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009I7W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.447

100

0.974
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404