Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SOI74_RS10330 Genome accession   NZ_CP139287
Coordinates   2203886..2204290 (+) Length   134 a.a.
NCBI ID   WP_019767972.1    Uniprot ID   A0A242T1I5
Organism   Acinetobacter pittii strain 564U     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2198886..2209290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS10315 (SOI74_10315) relA 2199872..2202178 (+) 2307 WP_002117181.1 RelA/SpoT family protein -
  SOI74_RS10320 (SOI74_10320) - 2202225..2202998 (-) 774 WP_019767974.1 SDR family oxidoreductase -
  SOI74_RS10325 (SOI74_10325) mazG 2203111..2203917 (+) 807 WP_019767973.1 nucleoside triphosphate pyrophosphohydrolase -
  SOI74_RS10330 (SOI74_10330) comEA 2203886..2204290 (+) 405 WP_019767972.1 ComEA family DNA-binding protein Machinery gene
  SOI74_RS10335 (SOI74_10335) pcnB 2204416..2205879 (+) 1464 WP_057085865.1 polynucleotide adenylyltransferase PcnB -
  SOI74_RS10340 (SOI74_10340) folK 2205876..2206358 (+) 483 WP_017387617.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SOI74_RS10345 (SOI74_10345) panB 2206404..2207213 (+) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SOI74_RS10350 (SOI74_10350) panC 2207217..2208065 (+) 849 WP_182917625.1 pantoate--beta-alanine ligase -
  SOI74_RS10355 (SOI74_10355) rapZ 2208089..2208940 (+) 852 WP_005066272.1 RNase adapter RapZ -
  SOI74_RS10360 (SOI74_10360) - 2208937..2209206 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15382.68 Da        Isoelectric Point: 10.5869

>NTDB_id=908821 SOI74_RS10330 WP_019767972.1 2203886..2204290(+) (comEA) [Acinetobacter pittii strain 564U]
MQLSMNLWKNKHNIFIVLFWSLISSALVQAQSFDQNFKEWKAKQQMYDQKLSVQRPSHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=908821 SOI74_RS10330 WP_019767972.1 2203886..2204290(+) (comEA) [Acinetobacter pittii strain 564U]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAACACAATATTTTCATTGTTTTATTTTGGAGCCTGATCTCATCAGCCCT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAAGCGAAACAGCAGATGTATGATCAGAAGTTGAGCGTGC
AGCGGCCCTCTCATTCTAATAGTCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTAAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A242T1I5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396