Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SOI81_RS14550 Genome accession   NZ_CP139286
Coordinates   3082375..3082779 (-) Length   134 a.a.
NCBI ID   WP_151748476.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3077375..3087779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS14520 (SOI81_14520) - 3077456..3077725 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  SOI81_RS14525 (SOI81_14525) rapZ 3077722..3078573 (-) 852 WP_002117179.1 RNase adapter RapZ -
  SOI81_RS14530 (SOI81_14530) panC 3078597..3079445 (-) 849 WP_239974793.1 pantoate--beta-alanine ligase -
  SOI81_RS14535 (SOI81_14535) panB 3079449..3080258 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SOI81_RS14540 (SOI81_14540) folK 3080304..3080786 (-) 483 WP_151748474.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SOI81_RS14545 (SOI81_14545) pcnB 3080783..3082249 (-) 1467 WP_239974795.1 polynucleotide adenylyltransferase PcnB -
  SOI81_RS14550 (SOI81_14550) comEA 3082375..3082779 (-) 405 WP_151748476.1 ComEA family DNA-binding protein Machinery gene
  SOI81_RS14555 (SOI81_14555) mazG 3082748..3083554 (-) 807 WP_320540939.1 nucleoside triphosphate pyrophosphohydrolase -
  SOI81_RS14560 (SOI81_14560) - 3083667..3084440 (+) 774 WP_320540940.1 SDR family oxidoreductase -
  SOI81_RS14565 (SOI81_14565) relA 3084489..3086795 (-) 2307 WP_016142186.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15459.69 Da        Isoelectric Point: 10.5146

>NTDB_id=908766 SOI81_RS14550 WP_151748476.1 3082375..3082779(-) (comEA) [Acinetobacter pittii strain AbaK]
MQFSMNLWKNKHYIFIALFWSLISSNFVHAQSFDQNFKEWKAKQQMYDQKLNMQHASHSNVSKSSAMSDSSGQIRLNQAS
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKARLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=908766 SOI81_RS14550 WP_151748476.1 3082375..3082779(-) (comEA) [Acinetobacter pittii strain AbaK]
ATGCAGTTCAGCATGAATCTTTGGAAGAATAAACACTATATTTTCATTGCTTTATTTTGGAGCCTGATTTCATCAAACTT
TGTTCACGCTCAATCTTTTGATCAAAATTTTAAGGAATGGAAGGCGAAGCAACAGATGTATGATCAGAAGTTGAACATGC
AACACGCCTCTCATTCTAATGTTTCAAAAAGCTCAGCTATGTCTGATTCGTCAGGACAAATTCGCTTGAATCAAGCCAGT
ATTGATGAGCTTCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAATGTAAAAGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAGCGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

45.161

92.537

0.418