Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   SOI81_RS11925 Genome accession   NZ_CP139286
Coordinates   2509399..2510106 (+) Length   235 a.a.
NCBI ID   WP_016141682.1    Uniprot ID   A0A151YV95
Organism   Acinetobacter pittii strain AbaK     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2504399..2515106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS11905 (SOI81_11905) - 2507211..2508020 (+) 810 WP_239975730.1 M23 family metallopeptidase -
  SOI81_RS11910 (SOI81_11910) - 2508017..2508442 (-) 426 WP_239968021.1 GNAT family N-acetyltransferase -
  SOI81_RS11915 (SOI81_11915) - 2508538..2508960 (-) 423 WP_004642007.1 OsmC family protein -
  SOI81_RS11920 (SOI81_11920) - 2509039..2509158 (-) 120 WP_002121587.1 hypothetical protein -
  SOI81_RS11925 (SOI81_11925) crp 2509399..2510106 (+) 708 WP_016141682.1 cAMP-activated global transcriptional regulator CRP Regulator
  SOI81_RS11930 (SOI81_11930) tas 2510266..2511315 (+) 1050 WP_320540818.1 NADP(H)-dependent aldo-keto reductase -
  SOI81_RS11935 (SOI81_11935) - 2511371..2512150 (-) 780 WP_016141684.1 M48 family metallopeptidase -
  SOI81_RS11940 (SOI81_11940) - 2512265..2512582 (-) 318 WP_016141685.1 hypothetical protein -
  SOI81_RS11945 (SOI81_11945) purA 2512704..2514023 (-) 1320 WP_016141686.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26522.10 Da        Isoelectric Point: 4.6573

>NTDB_id=908762 SOI81_RS11925 WP_016141682.1 2509399..2510106(+) (crp) [Acinetobacter pittii strain AbaK]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENPVSDDDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=908762 SOI81_RS11925 WP_016141682.1 2509399..2510106(+) (crp) [Acinetobacter pittii strain AbaK]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGATGAACGTGAAATTGTTGTCGCATATTTGAATCCGGGCGATTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCCGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
AATTTCATATGACAACTTCCACGAACTTAGCAAACAATATCCAGATTTAAGTTATGCTGTTTTTGCACAATTAGTTCGCC
GTCTAAAAAATACGACACGTAAAATGACAGATCTTGCTTTCATTGATGTGTCTGGTCGTATTGCACGTTGTTTAATCGAT
TTATCTTCTCAGCCAGAAGCAATGATTTTGCCGAATGGTCGTCAGATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGCTCACGTGAGATGGTTGGCCGTGTACTCAAAACCTTAGAAGATCAAGGTATGATCCAAACTGATGGTAAAGCTA
TTCTTATTTTTGATGCTTCATTAGAAGAAAACCCTGTTTCTGATGATGACTACGACGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YV95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.872

100

0.979
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404