Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   SOI81_RS01595 Genome accession   NZ_CP139286
Coordinates   342352..342834 (+) Length   160 a.a.
NCBI ID   WP_239975218.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337352..347834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS01585 (SOI81_01585) pilX 337666..338475 (+) 810 WP_239975220.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI81_RS01590 (SOI81_01590) pilY1 338487..342341 (+) 3855 WP_239975219.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI81_RS01595 (SOI81_01595) pilY2 342352..342834 (+) 483 WP_239975218.1 type IV pilin protein Machinery gene
  SOI81_RS01600 (SOI81_01600) pilE 342831..343256 (+) 426 WP_239975217.1 type IV pilin protein Machinery gene
  SOI81_RS01605 (SOI81_01605) rpsP 343404..343655 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI81_RS01610 (SOI81_01610) rimM 343675..344223 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  SOI81_RS01615 (SOI81_01615) trmD 344266..345021 (+) 756 WP_239975216.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI81_RS01620 (SOI81_01620) rplS 345241..345609 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI81_RS01625 (SOI81_01625) lip 345661..346602 (-) 942 WP_239967087.1 lipase family alpha/beta hydrolase -
  SOI81_RS01630 (SOI81_01630) - 346718..347752 (-) 1035 WP_320541149.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17552.80 Da        Isoelectric Point: 8.1055

>NTDB_id=908748 SOI81_RS01595 WP_239975218.1 342352..342834(+) (pilY2) [Acinetobacter pittii strain AbaK]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYESYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNGTANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=908748 SOI81_RS01595 WP_239975218.1 342352..342834(+) (pilY2) [Acinetobacter pittii strain AbaK]
ATGAATAAATATTATATTCTGCGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATGAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGCGAAATTCTAA
AATTGGCAGAACAATTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACGTTGCCA
CGGGGCGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGGTACGGCGAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAAAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACCGCTGTTGATAATGATTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-124)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.116

100

0.431