Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   SOI81_RS01585 Genome accession   NZ_CP139286
Coordinates   337666..338475 (+) Length   269 a.a.
NCBI ID   WP_239975220.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332666..343475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS01550 (SOI81_01550) - 333222..333377 (-) 156 WP_014207816.1 hypothetical protein -
  SOI81_RS01555 (SOI81_01555) rpoZ 333416..333694 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI81_RS01560 (SOI81_01560) gmk 333767..334396 (-) 630 WP_002116973.1 guanylate kinase -
  SOI81_RS01565 (SOI81_01565) ispH 334519..335469 (+) 951 WP_016142896.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI81_RS01570 (SOI81_01570) fimU 335641..336114 (+) 474 WP_216967680.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI81_RS01575 (SOI81_01575) pilV 336108..336668 (+) 561 WP_320541148.1 type IV pilus modification protein PilV Machinery gene
  SOI81_RS01580 (SOI81_01580) pilW 336668..337669 (+) 1002 WP_239975221.1 PilW family protein Machinery gene
  SOI81_RS01585 (SOI81_01585) pilX 337666..338475 (+) 810 WP_239975220.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI81_RS01590 (SOI81_01590) pilY1 338487..342341 (+) 3855 WP_239975219.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI81_RS01595 (SOI81_01595) pilY2 342352..342834 (+) 483 WP_239975218.1 type IV pilin protein Machinery gene
  SOI81_RS01600 (SOI81_01600) pilE 342831..343256 (+) 426 WP_239975217.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28520.28 Da        Isoelectric Point: 7.2645

>NTDB_id=908746 SOI81_RS01585 WP_239975220.1 337666..338475(+) (pilX) [Acinetobacter pittii strain AbaK]
MTHLTHKGRSKEKGATLIVVLIILLLVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSIPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTTLTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=908746 SOI81_RS01585 WP_239975220.1 337666..338475(+) (pilX) [Acinetobacter pittii strain AbaK]
GTGACCCATTTAACTCATAAAGGTAGATCTAAAGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGCTTGT
TATTTCTGTAGGTGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACGCCTTTAGAACTCATTGTACAGATGAATCCTACTACCCTAACTAATATTACTAATGTGATT
GGGGCGGCGCTCAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAACTTTTGTTATAAACCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTCGTTGAAGATGGCGGCGTAGCGG
GTTTCTGTGATTTAACAAGTGACTATGGAAGTAATCGCCAAGCAGTGGTTACTCAAGTTGCTGTAAGTATTCCAACAGAT
GCTGCTAGTGATATTCCAGGTTCAAATTTACCGCGAGGAACAAATACTTCGGAAGGTACACAACTTCCTAAAAGCATGTT
GTCTACGCAGCGTATTCGAGTGATTACAACAGCTTTTTTACCAGCCTATGCATCTACCTCTATCGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCACTTTAACAGCTAAACAAACATTGGCTGAGTGT
TTAGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTCACTCAAATTACGGCACC
GGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914