Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SOI81_RS01570 Genome accession   NZ_CP139286
Coordinates   335641..336114 (+) Length   157 a.a.
NCBI ID   WP_216967680.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330641..341114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS01545 (SOI81_01545) spoT 331101..333206 (-) 2106 WP_016142894.1 RelA/SpoT family protein -
  SOI81_RS01550 (SOI81_01550) - 333222..333377 (-) 156 WP_014207816.1 hypothetical protein -
  SOI81_RS01555 (SOI81_01555) rpoZ 333416..333694 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI81_RS01560 (SOI81_01560) gmk 333767..334396 (-) 630 WP_002116973.1 guanylate kinase -
  SOI81_RS01565 (SOI81_01565) ispH 334519..335469 (+) 951 WP_016142896.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI81_RS01570 (SOI81_01570) fimU 335641..336114 (+) 474 WP_216967680.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI81_RS01575 (SOI81_01575) pilV 336108..336668 (+) 561 WP_320541148.1 type IV pilus modification protein PilV Machinery gene
  SOI81_RS01580 (SOI81_01580) pilW 336668..337669 (+) 1002 WP_239975221.1 PilW family protein Machinery gene
  SOI81_RS01585 (SOI81_01585) pilX 337666..338475 (+) 810 WP_239975220.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16910.49 Da        Isoelectric Point: 8.5281

>NTDB_id=908743 SOI81_RS01570 WP_216967680.1 335641..336114(+) (fimU) [Acinetobacter pittii strain AbaK]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDENQRDLINTLSESKSQAILGRQDVSINLNSTASNTPT
SFNWKAASNSTLELKNIAANGTQSSSTATTLTFNANGVVTNITQDTLLSICNSKINKKKIIILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=908743 SOI81_RS01570 WP_216967680.1 335641..336114(+) (fimU) [Acinetobacter pittii strain AbaK]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAACTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCGCCGTCTATGTCAAATTTATTAGAAAGCAAACGACTAGATGAAAATCAACGAGACCTAATCAATACTTTGT
CAGAATCAAAGAGCCAAGCAATACTTGGTCGCCAAGATGTATCCATTAATCTGAATTCAACAGCCTCAAATACACCGACT
TCTTTTAATTGGAAAGCTGCTTCCAATAGCACTCTTGAGCTTAAAAATATCGCTGCTAATGGTACACAGAGCTCATCAAC
AGCGACGACTTTAACTTTTAATGCAAATGGAGTGGTAACCAATATTACTCAAGATACGCTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTATCATTTTAACGAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885