Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   SOI78_RS01945 Genome accession   NZ_CP139276
Coordinates   414041..414523 (+) Length   160 a.a.
NCBI ID   WP_005804550.1    Uniprot ID   A0A009N252
Organism   Acinetobacter pittii strain AN37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409041..419523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI78_RS01935 (SOI78_01935) pilX 409355..410164 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI78_RS01940 (SOI78_01940) pilY1 410176..414030 (+) 3855 WP_005804549.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI78_RS01945 (SOI78_01945) pilY2 414041..414523 (+) 483 WP_005804550.1 type IV pilin protein Machinery gene
  SOI78_RS01950 (SOI78_01950) pilE 414520..414945 (+) 426 WP_025464177.1 type IV pilin protein Machinery gene
  SOI78_RS01955 (SOI78_01955) rpsP 415093..415344 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI78_RS01960 (SOI78_01960) rimM 415364..415912 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  SOI78_RS01965 (SOI78_01965) trmD 415955..416710 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI78_RS01970 (SOI78_01970) rplS 416930..417298 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI78_RS01975 (SOI78_01975) lip 417351..418292 (-) 942 WP_078210319.1 lipase family alpha/beta hydrolase -
  SOI78_RS01980 (SOI78_01980) - 418408..419439 (-) 1032 WP_005804553.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17550.79 Da        Isoelectric Point: 8.4721

>NTDB_id=908654 SOI78_RS01945 WP_005804550.1 414041..414523(+) (pilY2) [Acinetobacter pittii strain AN37]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=908654 SOI78_RS01945 WP_005804550.1 414041..414523(+) (pilY2) [Acinetobacter pittii strain AN37]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACAGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009N252

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

40.678

100

0.45